Structure of PDB 1n5w Chain B Binding Site BS01

Receptor Information
>1n5w Chain B (length=804) Species: 504832 (Afipia carboxidovorans OM5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TVEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFV
RSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAV
LADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEP
DAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKD
MFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGL
PEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENL
STTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGF
MNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIET
LAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVG
YHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSM
FDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEE
GNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGD
LEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNM
TYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTE
AFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHP
IGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQL
GLHV
Ligand information
Ligand IDCUM
InChIInChI=1S/Cu.Mo.H2O.O.S/h;;1H2;;/q+1;+7;;;/p-1
InChIKeyVFYYAMWTODUIEV-UHFFFAOYSA-M
SMILES
SoftwareSMILES
ACDLabs 12.01[Cu+]S[Mo+6](=O)O
CACTVS 3.370
OpenEye OEToolkits 1.7.2		O[Mo+6](=O)S[Cu+]
FormulaCu H Mo O2 S
NameCU(I)-S-MO(VI)(=O)OH CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain1n5w Chain B Residue 3921 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1n5w Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution
Resolution1.5 Å
Binding residue
(original residue number in PDB)		G272 A385 R387 C388 Y568 G569 E763
Binding residue
(residue number reindexed from 1)		G267 A380 R382 C383 Y563 G564 E758
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) Q240 V275 P352 I358 R387 C388 E763 S764
Catalytic site (residue number reindexed from 1) Q235 V270 P347 I353 R382 C383 E758 S759
Enzyme Commision number 1.2.5.3: aerobic carbon monoxide dehydrogenase.
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0005507 copper ion binding
GO:0008805 carbon-monoxide oxygenase activity
GO:0016491 oxidoreductase activity
GO:0030151 molybdenum ion binding
GO:0043885 anaerobic carbon-monoxide dehydrogenase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:1n5w, PDBe:1n5w, PDBj:1n5w
PDBsum1n5w
PubMed12475995
UniProtP19919|DCML_AFIC5 Carbon monoxide dehydrogenase large chain (Gene Name=coxL)

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