Structure of PDB 1n1l Chain B Binding Site BS01

Receptor Information
>1n1l Chain B (length=153) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTN
VDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLL
SPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVTKAVDFIPVENLET
TMR
Ligand information
>1n1l Chain D (length=16) Species: 3052230 (Hepacivirus hominis) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
GSVVIVGRIVLSGKPA
Receptor-Ligand Complex Structure
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PDB1n1l Pyrrolidine-5,5-trans-lactams. 2. The use of X-ray Crystal Structure Data in the Optimisation of P3 and P4 Substituents
Resolution2.6 Å
Binding residue
(original residue number in PDB)		V29 E30 G31 E32 V33 I35 V36 S37 R62 T63 I64 A65 P88 G90
Binding residue
(residue number reindexed from 1)		V2 E3 G4 E5 V6 I8 V9 S10 R35 T36 I37 A38 P61 G63
Enzymatic activity
Catalytic site (original residue number in PDB) H57 D81 G137 S139
Catalytic site (residue number reindexed from 1) H30 D54 G110 S112
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.21.98: hepacivirin.
3.4.22.-
3.6.1.15: nucleoside-triphosphate phosphatase.
3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0008236 serine-type peptidase activity
Biological Process
GO:0006508 proteolysis
GO:0019087 transformation of host cell by virus

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Molecular Function
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Biological Process
External links
PDB RCSB:1n1l, PDBe:1n1l, PDBj:1n1l
PDBsum1n1l
PubMed12465917
UniProtP27958|POLG_HCV77 Genome polyprotein

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