Structure of PDB 1m2v Chain B Binding Site BS01

Receptor Information
>1m2v Chain B (length=748) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FLTPAQEQLHQQIRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERML
VPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDP
PPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQS
DPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKS
GLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDQINMMDI
ADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPAL
KSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNENTSKETAQLLSCQDSF
YKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGK
NPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDL
CAFSTMPRDQSYLFEVNVDESIMADYCYVQVAVLLSLNNSQRRIRIITLA
MPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDI
LATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFRSGIVPSDH
RASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPGTIVLPQPINATS
SLFERYGLYLIDNGNELFLWMGGDAVPALVFFNQRVRNIINQLRNHDDVI
TYQSLYIVRAREVATLRLWASSTLVEDKILNNESYREFLQIMKARISK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain1m2v Chain B Residue 950 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1m2v Structure of the Sec23/24-Sar1 pre-budding complex of the COPII vesicle coat
Resolution2.75 Å
Binding residue
(original residue number in PDB)		C231 C234 C253 C256
Binding residue
(residue number reindexed from 1)		C112 C115 C134 C137
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000149 SNARE binding
GO:0005048 signal sequence binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006886 intracellular protein transport
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 protein transport
GO:0016192 vesicle-mediated transport
GO:0016236 macroautophagy
GO:0070863 positive regulation of protein exit from endoplasmic reticulum
GO:0090110 COPII-coated vesicle cargo loading
GO:1902953 positive regulation of ER to Golgi vesicle-mediated transport
Cellular Component
GO:0000139 Golgi membrane
GO:0000329 fungal-type vacuole membrane
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0012507 ER to Golgi transport vesicle membrane
GO:0016020 membrane
GO:0030127 COPII vesicle coat
GO:0031410 cytoplasmic vesicle
GO:0070971 endoplasmic reticulum exit site

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1m2v, PDBe:1m2v, PDBj:1m2v
PDBsum1m2v
PubMed12239560
UniProtP40482|SEC24_YEAST Protein transport protein SEC24 (Gene Name=SEC24)

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