Structure of PDB 1lvb Chain B Binding Site BS01

Receptor Information
>1lvb Chain B (length=214) Species: 12227 (Tobacco etch virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRDYNPISSTICHLTNESDGHTTSLYGIGFGPFIITNKHLFRRNNGTLLV
QSLHGVFKVKNTTTLQQHLIDGRDMIIIRMPKDFPPFPQKLKFREPQREE
RICLVTTNFQTKSMSSMVSDTSCTFPSSDGIFWKHWIQTKDGQAGSPLVS
TRDGFIVGIHSASNFTNTNNYFTSVPKNFMELLTNQEAQQWVSGWRLNAD
SVLWGGHKVFMSKP
Ligand information
Receptor-Ligand Complex Structure
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PDB1lvb Structural basis for the substrate specificity of tobacco etch virus protease.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		T29 T30 S31 H46 D81 T146 D148 G149 A151 H167 S168 A169 S170 N171 F172 N176 Y178 G213 H214 K215 V216 F217 M218 K220
Binding residue
(residue number reindexed from 1)		T22 T23 S24 H39 D74 T139 D141 G142 A144 H160 S161 A162 S163 N164 F165 N169 Y171 G206 H207 K208 V209 F210 M211 K213
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.-.-
3.4.22.44: nuclear-inclusion-a endopeptidase.
3.4.22.45: helper-component proteinase.
3.6.4.-
Gene Ontology
Molecular Function
GO:0008234 cysteine-type peptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1lvb, PDBe:1lvb, PDBj:1lvb
PDBsum1lvb
PubMed12377789
UniProtP04517|POLG_TEV Genome polyprotein

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