Structure of PDB 1kht Chain B Binding Site BS01
Receptor Information
>1kht Chain B (length=191) Species:
2188
(Methanococcus voltae) [
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KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEEN
LVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGY
LPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQH
QFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR
Ligand information
Ligand ID
AMP
InChI
InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
UDMBCSSLTHHNCD-KQYNXXCUSA-N
SMILES
Software
SMILES
CACTVS 3.370
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
CACTVS 3.370
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N
ACDLabs 12.01
O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)N
Formula
C10 H14 N5 O7 P
Name
ADENOSINE MONOPHOSPHATE
ChEMBL
CHEMBL752
DrugBank
DB00131
ZINC
ZINC000003860156
PDB chain
1kht Chain B Residue 2193 [
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Receptor-Ligand Complex Structure
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PDB
1kht
Structures of thermophilic and mesophilic adenylate kinases from the genus Methanococcus
Resolution
2.5 Å
Binding residue
(original residue number in PDB)
F39 G40 M43 R56 R60 Q71 T91 H92 V95 G104 R138
Binding residue
(residue number reindexed from 1)
F38 G39 M42 R55 R59 Q70 T90 H91 V94 G103 R137
Annotation score
5
Enzymatic activity
Enzyme Commision number
2.7.4.3
: adenylate kinase.
Gene Ontology
Molecular Function
GO:0004017
adenylate kinase activity
GO:0005524
ATP binding
GO:0016301
kinase activity
Biological Process
GO:0016310
phosphorylation
GO:0046940
nucleoside monophosphate phosphorylation
Cellular Component
GO:0005737
cytoplasm
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1kht
,
PDBe:1kht
,
PDBj:1kht
PDBsum
1kht
PubMed
12860130
UniProt
P43411
|KADA_METVO Adenylate kinase (Gene Name=adkA)
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