Structure of PDB 1jvz Chain B Binding Site BS01

Receptor Information
>1jvz Chain B (length=520) Species: 293 (Brevundimonas diminuta) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SNSWAVAPGKTANGNALLLQNPHLSWTTDYFTYYEAHLVTPDFEIYGATQ
IGLPVIRFAFNQRMGITNTVNGMVGATNYRLTLQDGGYLYDGQVRPFERR
QASYRLRQADGSTVDKPLEIRSSVHGPVFERADGTAVAVRVAGLDRPGML
EQYFDMITAHSFDDYEAAMARMQVPTFNIVYADREGTINYSFNGVAPKRA
EGDIAFWQGNVPGDSSRYLWTETHPLDDLPRVTNPPGGFVQNSNDPPWTP
TWPVTYCPANHPSYLAPQTPHSLRAQQSVRLMSENDDLTLERFMALQFSH
RAVMADRTLPDLIPAALIDPDPEVQAAARLLAAWDRDFTSDSRAALLFEE
WARLFAGQNFAGQAAFATPWSLDKPVSTPYGVRDPKAAVDQLRTAIANTK
RKYGAIDRPFGDASRMILNDVNVPGAAGYGNLGSFRVFTWSDPDENGIRT
PVHGETWVAMIEFSTPVRAYGLMSYGNSRQPGTTHYSDQIERVSRADFRE
LLLRREQVEAAVQERTPFNF
Ligand information
Ligand IDCEN
InChIInChI=1S/C15H18N2O8S/c1-7(18)25-5-8-6-26-14-11(13(22)17(14)12(8)15(23)24)16-9(19)3-2-4-10(20)21/h11,14H,2-6H2,1H3,(H,16,19)(H,20,21)(H,23,24)/t11-,14-/m1/s1
InChIKeyIXUSDMGLUJZNFO-BXUZGUMPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(=O)OCC1=C(N2[C@@H]([C@@H](C2=O)NC(=O)CCCC(=O)O)SC1)C(=O)O
OpenEye OEToolkits 1.5.0CC(=O)OCC1=C(N2C(C(C2=O)NC(=O)CCCC(=O)O)SC1)C(=O)O
CACTVS 3.341CC(=O)OCC1=C(N2[CH](SC1)[CH](NC(=O)CCCC(O)=O)C2=O)C(O)=O
CACTVS 3.341CC(=O)OCC1=C(N2[C@H](SC1)[C@H](NC(=O)CCCC(O)=O)C2=O)C(O)=O
ACDLabs 10.04O=C2N1C(=C(CSC1C2NC(=O)CCCC(=O)O)COC(=O)C)C(=O)O
FormulaC15 H18 N2 O8 S
Name7BETA-(4CARBOXYBUTANAMIDO) CEPHALOSPORANIC ACID;
GLUTARYL 7-AMINO CEPHALOSPORANIC ACID
ChEMBL
DrugBank
ZINCZINC000008927232
PDB chain1jvz Chain B Residue 999 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1jvz Structure of cephalosporin acylase in complex with glutaryl-7-aminocephalosporanic acid and glutarate: insight into the basis of its substrate specificity
Resolution2.6 Å
Binding residue
(original residue number in PDB)
S170 H192 L193 Y202 R226 F227 V239
Binding residue
(residue number reindexed from 1)
S1 H23 L24 Y33 R57 F58 V70
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) S170 H192 V239 N413 E624
Catalytic site (residue number reindexed from 1) S1 H23 V70 N244 E455
Enzyme Commision number 3.5.1.93: glutaryl-7-aminocephalosporanic-acid acylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
Biological Process
GO:0017000 antibiotic biosynthetic process

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Molecular Function

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Biological Process
External links
PDB RCSB:1jvz, PDBe:1jvz, PDBj:1jvz
PDBsum1jvz
PubMed11755403
UniProtQ9L5D6|G7AC_BREDI Glutaryl-7-aminocephalosporanic-acid acylase

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