Structure of PDB 1jdt Chain B Binding Site BS01
Receptor Information
>1jdt Chain B (length=231) Species:
2287
(Saccharolobus solfataricus) [
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NPVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGK
YNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGE
YIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYV
GNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVL
VVSDNLAKITKEELEKSVMDGAKAVLDTLTS
Ligand information
Ligand ID
SO4
InChI
InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2
InChIKey
QAOWNCQODCNURD-UHFFFAOYSA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
[O-]S(=O)(=O)[O-]
CACTVS 3.341
[O-][S]([O-])(=O)=O
ACDLabs 10.04
[O-]S([O-])(=O)=O
Formula
O4 S
Name
SULFATE ION
ChEMBL
DrugBank
DB14546
ZINC
PDB chain
1jdt Chain B Residue 2250 [
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Receptor-Ligand Complex Structure
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PDB
1jdt
Three-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus.
Resolution
2.0 Å
Binding residue
(original residue number in PDB)
G21 R25 R86 G88 T89
Binding residue
(residue number reindexed from 1)
G20 R24 R85 G87 T88
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
H5 G21 R25 R43 E75 R86 T89 S204 D205 L207 L219
Catalytic site (residue number reindexed from 1)
H4 G20 R24 R42 E74 R85 T88 S203 D204 L206 L214
Enzyme Commision number
2.4.2.1
: purine-nucleoside phosphorylase.
2.4.2.28
: S-methyl-5'-thioadenosine phosphorylase.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0016757
glycosyltransferase activity
GO:0016763
pentosyltransferase activity
GO:0017061
S-methyl-5-thioadenosine phosphorylase activity
Biological Process
GO:0009116
nucleoside metabolic process
GO:0009164
nucleoside catabolic process
Cellular Component
GO:0005829
cytosol
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1jdt
,
PDBe:1jdt
,
PDBj:1jdt
PDBsum
1jdt
PubMed
11489901
UniProt
P50389
|PNPH_SACS2 Purine nucleoside phosphorylase (Gene Name=SSO2706)
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