Structure of PDB 1ij8 Chain B Binding Site BS01

Receptor Information
>1ij8 Chain B (length=119) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYTTAVTNEIKESPLHGTEN
TINKRTQPTFGFTVNWKFSESTTVFTGQCFIDRNGKEVLKTMWLLRSSVN
DIGDDWKATRVGINIFTRL
Ligand information
Ligand IDBNI
InChIInChI=1S/C16H20N4O4S/c21-14(17-10-5-7-11(8-6-10)20(23)24)4-2-1-3-13-15-12(9-25-13)18-16(22)19-15/h5-8,12-13,15H,1-4,9H2,(H,17,21)(H2,18,19,22)/t12-,13-,15-/m0/s1
InChIKeyPORZMUYPQKOFQY-YDHLFZDLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1cc(ccc1NC(=O)CCCCC2C3C(CS2)NC(=O)N3)[N+](=O)[O-]
ACDLabs 10.04O=C1NC2C(SCC2N1)CCCCC(=O)Nc3ccc([N+]([O-])=O)cc3
CACTVS 3.341[O-][N+](=O)c1ccc(NC(=O)CCCC[C@@H]2SC[C@@H]3NC(=O)N[C@H]23)cc1
OpenEye OEToolkits 1.5.0c1cc(ccc1NC(=O)CCCC[C@H]2[C@@H]3[C@H](CS2)NC(=O)N3)[N+](=O)[O-]
CACTVS 3.341[O-][N+](=O)c1ccc(NC(=O)CCCC[CH]2SC[CH]3NC(=O)N[CH]23)cc1
FormulaC16 H20 N4 O4 S
Name5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE;
BIOTINYL P-NITROANILINE
ChEMBL
DrugBankDB03549
ZINCZINC000006535889
PDB chain1ij8 Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1ij8 Chicken avidin exhibits pseudo-catalytic properties. Biochemical, structural, and electrostatic consequences.
Resolution2.0 Å
Binding residue
(original residue number in PDB)
S216 Y233 W270 F272 S275 T277 W297
Binding residue
(residue number reindexed from 1)
S15 Y32 W66 F68 S71 T73 W93
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0019731 antibacterial humoral response
Cellular Component
GO:0005576 extracellular region

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Cellular Component
External links
PDB RCSB:1ij8, PDBe:1ij8, PDBj:1ij8
PDBsum1ij8
PubMed11395489
UniProtP02701|AVID_CHICK Avidin (Gene Name=AVD)

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