Structure of PDB 1fv3 Chain B Binding Site BS01
Receptor Information
>1fv3 Chain B (length=451) Species:
1513
(Clostridium tetani) [
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KNLDCWVDNEEDIDVILKKSTILNLDINNDIISDISGFNSSVITYPDAQL
VPGINGKAIHLVNNESSEVIVHKAMDIEYNDMFNNFTVSFWLRVPKVSAS
HLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQI
TFRDLPDKFNAYLANKWVFITITNDRLSSANLYINGVLMGSAEITGLGAI
REDNNITLKLDRCNNNNQYVSIDKFRIFCKALNPKEIEKLYTSYLSITFL
RDFWGNPLRYDTEYYLIPVASSSKDVQLKNITDYMYLTNAPSYTNGKLNI
YYRRLYNGLKFIIKRYTPNNEIDSFVKSGDFIKLYVSYNNNEHIVGYPKD
GNAFNNLDRILRVGYNAPGIPLYKKMEAVKLRDLKTYSVQLKLYDDKNAS
LGLVGTHNGQIGNDPNRDILIASNWYFNHLKDKILGCDWYFVPTDEGWTN
D
Ligand information
Ligand ID
GAL
InChI
InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6-/m1/s1
InChIKey
WQZGKKKJIJFFOK-FPRJBGLDSA-N
SMILES
Software
SMILES
CACTVS 3.370
OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.7.2
C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370
OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
ACDLabs 12.01
OC1C(O)C(OC(O)C1O)CO
OpenEye OEToolkits 1.7.2
C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
Formula
C6 H12 O6
Name
beta-D-galactopyranose;
beta-D-galactose;
D-galactose;
galactose
ChEMBL
CHEMBL300520
DrugBank
ZINC
ZINC000002597049
PDB chain
1fv3 Chain D Residue 4 [
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Receptor-Ligand Complex Structure
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PDB
1fv3
The crystal structure of tetanus toxin Hc fragment complexed with a synthetic GT1b analogue suggests cross-linking between ganglioside receptors and the toxin.
Resolution
2.3 Å
Binding residue
(original residue number in PDB)
D1222 T1270 H1271 W1289
Binding residue
(residue number reindexed from 1)
D358 T406 H407 W425
Annotation score
4
Enzymatic activity
Catalytic site (original residue number in PDB)
A922 K996
Catalytic site (residue number reindexed from 1)
A58 K132
Enzyme Commision number
3.4.24.68
: tentoxilysin.
Gene Ontology
Cellular Component
GO:0005576
extracellular region
View graph for
Cellular Component
External links
PDB
RCSB:1fv3
,
PDBe:1fv3
,
PDBj:1fv3
PDBsum
1fv3
PubMed
11418600
UniProt
P04958
|TETX_CLOTE Tetanus toxin (Gene Name=tetX)
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