Structure of PDB 1f8v Chain B Binding Site BS01

Receptor Information
>1f8v Chain B (length=313) Species: 103782 (Pariacoto virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NPRLTDAGLAFLKCAFAAPDFSVDPGKGIPDNFHGRTLAIKDCNTTSVVF
TPNTDTYIVVAPVPGFAYFRAEVAVGAQPTTFVGVPYPTYATNFGAGSQN
GLPAVNNYSKFRYASMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAV
TAITPAPGVFANFVDKRINGLRGIRPLAPRDNYSGNFIDGAYTFAFDKST
DFEWCDFVRSLEFSESNVLGAATAMKLLAPGGGTDTTLTGLGNVNTLVYK
ISTPTGAVNTAILRTWNCIELQPYTDSALFQFSGVSPPFDPLALECYHNL
KMRFPVAVSSREN
Ligand information
>1f8v Chain E (length=21) Species: 103782 (Pariacoto virus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
SKFWEGVLRVLNQISGTLSVI
Receptor-Ligand Complex Structure
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PDB1f8v The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		N49 K61 A65 D68 F242 E343 C344 N347 L348 F352 N361
Binding residue
(residue number reindexed from 1)		N1 K13 A17 D20 F194 E295 C296 N299 L300 F304 N313
Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1f8v, PDBe:1f8v, PDBj:1f8v
PDBsum1f8v
PubMed11135676
UniProtQ9J7Z0|CAPSD_PAV Capsid protein alpha (Gene Name=alpha)

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