Structure of PDB 1dek Chain B Binding Site BS01

Receptor Information
>1dek Chain B (length=231) Species: 10665 (Tequatrovirus T4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAAN
TDYPCLTRKEFEGIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVF
VFDDEGKESVNFVAFNKITDVINNIEDQWSVRRLMQALGTDLIVNNFDRM
YWVKLFALDYLDKFNSGYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGA
GLPIRDGDLVITNDGSLEELFSKIKNTLKVL
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain1dek Chain B Residue 300 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1dek Crystal structure of bacteriophage T4 deoxynucleotide kinase with its substrates dGMP and ATP.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		Y42 Q85 E108
Binding residue
(residue number reindexed from 1)		Y42 Q85 E108
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) D15 R68
Catalytic site (residue number reindexed from 1) D15 R68
Enzyme Commision number 2.7.4.13: (deoxy)nucleoside-phosphate kinase.
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0047507 (deoxy)nucleoside-phosphate kinase activity
Biological Process
GO:0016310 phosphorylation

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Molecular Function
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Biological Process
External links
PDB RCSB:1dek, PDBe:1dek, PDBj:1dek
PDBsum1dek
PubMed8670851
UniProtP04531|DNMK_BPT4 Deoxynucleotide monophosphate kinase (Gene Name=1)

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