Structure of PDB 1bs8 Chain B Binding Site BS01

Receptor Information
>1bs8 Chain B (length=168) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQ
VDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALV
PRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLK
QQRIRQKVEKLDRLKARA
Ligand information
Receptor-Ligand Complex Structure
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PDB1bs8 Iron center, substrate recognition and mechanism of peptide deformylase.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		E542 G543 I544 G545 E588 G589 R597 H632 E633
Binding residue
(residue number reindexed from 1)		E42 G43 I44 G45 E88 G89 R97 H132 E133
Enzymatic activity
Catalytic site (original residue number in PDB) G545 Q550 C590 L591 H632 E633 H636
Catalytic site (residue number reindexed from 1) G45 Q50 C90 L91 H132 E133 H136
Enzyme Commision number 3.5.1.88: peptide deformylase.
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0008198 ferrous iron binding
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0043022 ribosome binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0043686 co-translational protein modification
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1bs8, PDBe:1bs8, PDBj:1bs8
PDBsum1bs8
PubMed9846875
UniProtP0A6K3|DEF_ECOLI Peptide deformylase (Gene Name=def)

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