Structure of PDB 8q7z Chain As Binding Site BS01

Receptor Information
>8q7z Chain As (length=143) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PGVTVKDVNQQEFVRALAAFLKKSGKLKVPDWVDTVKLAKHKELAPYDEN
WFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVLRSHFSRGSQSVAR
RVLQALEGLKMVEKEQDGGRKLTPQGQRDLDRIAGQVAAASKK
Ligand information
>8q7z Chain A2 (length=1676) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca
ugcaugucuaaguacacacgggcgguacagugaaacugcgaauggcucau
uaaaucaguuaugguuccuuuggucgcuccuacuuggauaacugugguaa
uucuagagcuaauacaugccgacgagcgccgaccuccggggacgcgugca
uuuaucaguggugacucuagauaaccucgagccgaucgcacgcccccgug
gcggcgacgacccauucgaaugucugcccuaucaacuuucgaugguacug
ucugugccuaccauggugaccacggguaacggggaaucaggguucgauuc
cggagagggagccugagaaacggcuaccacauccaaggaaggcagcaggc
gcgcaaauuacccacucccgacccggggagguagugacgaaaaauaacaa
uacaggacucuuucgaggcccuguaauuggaaugaguccacuuuaaaucc
uuuaacgaggauccauuggagggcaagucuggugccagcagccgcgguaa
uuccagcuccaauagcguauauuaaaguugcugcaguuaaaaagcucgua
guuggaucuugggauucccaguuuacuuugaaaaaauuagaguguucaaa
gcaggcuggccgccggaauacuccagcuaggaauaauggaauaggacucc
gguucuauuucggaaacggggccaugauuaagagggacggccgggggcau
ucguauugugccgcuagaggugaaauucuuggaccggcgcaagacgaacu
aaagcgaaagcauuugccaagaauguuuucauuaaucaagaacgaaaguc
ggagguucgaagacgaucagauaccgucguaguuccgaccauaaacgaug
ccgacucgcgauccggcggcguuauucccaugacccgccgggcagcuccc
gggaaacccaagucuuuggguuccggggggaguaugguugcaaagcugaa
acuuaaaggaauugacggaagggcaccaccaggaguggagccugcggcuu
aauuugacucaacacgggaaaccucacccggcccggacacggacaggauu
gacagauugagagcucuuucucgauuccgugggugguggugcauggccgu
ucuuaguugguggagcgauuugucugguuaauuccgauaacgaacgagac
ucuggcaugcuaacuaguuacgcgacccccgagcggucggcguccaacuu
cuuagagggacaaguggcguucagccacccgagauugagcaauaacaggu
cugugaugcccuuagauguccggggcugcacgcgcgcuacacugacuggc
ucagcuugugucuacccuacgccggcaggcgcggguaacccguugaaccc
cauucgugauggggaucggggauugcaauuauuccccaugaacgaggaau
ucccaguaagugcgggucauaagcucgcguugauuaagucccugcccuuu
guacacaccgcccgucgcuacuaccgauuggaugguuuagugagguccuc
ggaucggccccggcggggucggccacggcccugccggagcgucgagaaga
cggucgaacuugacuaucuagaggaaguaaaagucguaacaagguuuccg
uaggugaaccugcggaaggaucauua
...<<<<<.[.((((>>>>><<<.<<<<<<...<.<<..<......<<<.
<<<..<<....<<....<<..........>>...>>.>>......<<...
.....<<<.<<<..<<....<<<<<.........<<.....<<.<<<...
..>>>.>>......>>.........<<<<...<<<..>>>...>>>><<.
.<<<<<...<......>..>>>>>......>>...<<<<.<<<<.....>
>>>>>>>.>>.>>>...>>>>>.>>>.<<<....<<<....<<<<<<...
........>>>>>>>>>......>>>...<<<.<<<<....>>>>....>
>>.>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>>>
.........<<<....<<<<...>>>>..>>>..>...>>.>.....<<<
<<<<<<.<<<....>>>..>>>>>>.>>>......<<..<..........
.>..>>.........<<<<<((......<<<<.....<<..))>>.....
..>>>>.>>>>>..>>>>>>.>>>.........<.<((.....<.<<...
<<<.<<...<.<<....>>>..<<<<<<.<.......<<...<.......
>..<<<.....>>>....>>......>.>>>..>>>........<.<<<<
<.<<<<.....>>>>.>>>>>.>....>>....<<<<<<..<...<<<<.
.<<..<<<<<<<<...<<<......>>>......>>>>>>>>..>>....
...<<....>>...>>>>..>..>>>.>>>...>>>...>>.>....<<<
<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>..........<
<<.<<..<<..<<<<<<<<.<<<<<....>>>>>>>>>>>>>..>>....
<<..))>>...>>.....>>>.>.>.<<<......<<<<....>>>>...
.>>>..)))).]<<<<<.<<<<<<<..<<..<<<<<..<<<.<<<<<<..
....<<........>>..........<<<<<.<....<<<<<<.......
<<.<<<........>>>.>>.....>>>>>>...<<.<<<..<<.<<<<<
<....<<<.<<<<<....>>>...<<<......>>>...>>.>>>....<
<<...<...<<<<..<<<<<<<<<<<<.......>>>>.>>>>..>>>>.
.>>>>..>.....<<<<<.....>>>>>........>>>....>>>.>>>
.....>>>>>>>.....>.>>>>>...>>.>>>>.>>>.....<<.<<<.
.......<.......<<<.<<<<....>>>>.>>>....>.........>
>>.>>......<.....<<<<<..........>>>>>.....>.....>>
>>>.....<<<<<<<<.......>>>>>>>>......>>...>>>>>>>>
>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.<<<..<<<<.<<
...<<<<<.<<<<<<..<<<<....>>>>..>>>>>>...>>>>>...>>
.>>>>..>>>.>>>>>>>>...>>.>>>>...>.>>...>.....<<<<<
<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q7z Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.5 Å
Binding residue
(original residue number in PDB)
P2 G3 K7 Q11 Q12 V15 W33 V37 K38 L39 K41 K43 E44 L45 P47 Y48 T55 R56 S59 R62 H63 X67 G71 S74 K77 I78 R82 Q83 R84 G86 V87 L88 R89 H91 F92 S96 Q97 S98 R101 R102 Q105 K115 G120 R121 Q128 R129 D132
Binding residue
(residue number reindexed from 1)
P1 G2 K6 Q10 Q11 V14 W32 V36 K37 L38 K40 K42 E43 L44 P46 Y47 T54 R55 S58 R61 H62 X66 G70 S73 K76 I77 R81 Q82 R83 G85 V86 L87 R88 H90 F91 S95 Q96 S97 R100 R101 Q104 K114 G119 R120 Q127 R128 D131
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