Structure of PDB 6xyw Chain An Binding Site BS01

Receptor Information
>6xyw Chain An (length=141) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGK
EGSLSAARRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGD
AAPMAYIEFIDRENELRQSKPATPQPPQRVPLDPWERSRLT
Ligand information
>6xyw Chain 1 (length=2842) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gaaugcauuggauggaugcccgggcauugagaaggaaggacgcuuucaga
ggcgaaaggccauggggagauaccgucugugauccauggaucuccgaucg
ggaaaccguauccaagcuccguggcuagucugcgcucuuuggacuuugaa
aacuuagcgaacugaaacaucuaaguagcuaaaggaagggaaaucaaccg
agaccccguuaguagcggcgagcgagagcggauuugggauuuuaagaaaa
agaaagacgaagcacuucuuuuucgccagguuuacuguaauugugaaaag
guuggaagaucuggccaaagaaggugauagccccguagauucguuccuau
gguucgauccuucccaguaaaacgcggcguguucgaauucugaucgcuuu
uacgcgagaaagggggaccacccucuaagccuaaguauuccucaaugacc
gauagcguacaaguaccgugagggaaaggugaaaagaacccuaugacggg
agugcaauagagaaccugagauccgaugcgaacaaucagucgaaggagua
gucaagcgcacucacucuaacggcguaccuuuugcaugaugggucagcga
ggaaaugggaagagcggcuuaagccauuagguguaggcgcuuuccaaagg
uggaaucuucuaguucuuccuauuugacccgaaaccgaucgaucuagcca
ugagcagguugaagagagcucuaacaggccuuggaggaccgaacccacgu
auguggcaaaauacggggaugacuuguggcuaggggugaaaggccaacca
agaucggauauagcugguuuuccgcgaaaucuauuucaguagagcguaug
augucgauggcccgagguagagcacucaaugggcuaggguggcuuaccaa
ccccagggaaacuccgaauacaggccguucucguuuguacagacagacuu
uuggggugcuaagauccaaagucgagagggaaacagcccagaucguacgc
uaaggucccuaagcaaucacuuaguggaaaaggaagugaucgagcgauga
caaccaggaggugggcuuggaagcagccauccuuugaagaaagcguaaua
gcucacuggucuagcuccauggcaccgaaaauguaucagggcucaaguga
uucaccgaagcgacgagaccuugaaagcugcuuuuucaagugucaguagc
ggaacguucugucaaucggggaagguuuuuggugacaagaccuggagaua
ucagaagugagaaugcugacaugaguaacgauaaauccugugaaaaacac
gaucgccugccaguggaaggcuuucugcguucagucaaucuacgcagagu
gaaucggucccuaaggaacccccgaaagggcugccguccgauggguacac
gaaagugacgaaguugcuuugacuacaaaaccaugccucucucuuggagc
gaauuggaugaucgggccgagggcagcguagcgccucuuccccucacucu
ccuuucuccaauaugaaccuugagucaucaaaggcgagucuguuuauagu
cgcgacucuugucauagucaagaagguugaaacuuccaggaaaaaacuuc
gaauugggagggcgauccucccggugaacugaccguaccccaaaccgaca
caggugaacaaguagaguauacuagggcgcuugagagaaccaugucgaag
gaacucggcaaaaugaccccguaacuucgggagaaggggugcucuccuau
cuuuugauuaggaaagcggcacauaccaggggguagcgacuguuuauuaa
aaacacaggacucugcuaagugguaacacgauguauagagucugacaccu
gcccggugcuggaaagucaaaaggagaaguguuauaagcuuugaauggaa
gccccgguaaacggcggcaguaacucuaacuguccuaagguagcgaaauu
ccuugucgcauaaguagcgaccugcacgaaugguguaacgacugccccgc
ugucuccgacauggacccggugaaauugaauucuccgugaagaugcggag
uaccaacggcuagacgguaagaccccgugcaccuucacuauagcuucgca
gugacaaccuugaucgaauguguaggauaggugggaggucgugacauaga
aggaccaauccugaaagaccacucuuucgucuaagggugccuaaccgccg
cggcgggacacugcgagguggguaguuuaucuggggcggaugccuccuaa
agaguaacggaggugugcgaagguaggcucaagcuaagauucugcucgug
agcguaaugguauaagccugccugacugugagaccgacuggucgaacaga
gacgaaagucggccauagugauccgggagucccguguggaagggcucucg
cucaacggaucaaagguacgccggggauaacaggcugaugacucccaaga
gcucuuaucgacggagucguuuggcaccucgaugucgacucaucacaucc
ugggguugaagaaggucccaaggguucgguuguucgccgauucaaguggu
acgugaguuggguuuagaacgucgugagacaguucgguuccuaucuaccg
uugguguuaaagggagaacugcgaggagccaacccuaguacgagaggacu
ggguugggccaaccuaugguguaccgguuguuaugccaauagcagcgccg
ggcagcuaaguugguauggaagaacugcugcuuagcgggaaauccuucuc
uauacaaguucucggaacagguuuuagaacagaacuucgauaggcgggag
guggaagcaccgcgaggugugaagccaucucguacuaaacga
...<<<<<<<<<<....<<<..<<<<<<<<<<.....<<<<<<.......
.>>>.....<<<<<<<..<<.....>>.....>>>>>>>...>>>...<<
<....>>>..<<<<<<...<<<.........>>>...>>>>>>.......
..<<<<<<.....<......>......>>>>>.>...<.....<<....>
>....<<<<.....<<.....>>....>>>>....<<.............
...<<<<.........>>>>.....<<<..............<<....<<
<........>>>.<<.......((.....>>))....>.>.........>
>>..................<.<<..<..........>..>>.>......
..........<<<<<..((((>>>>>...>>....>..>.>>>>>>>.>>
...............<<....>>....>>.........<<<......>>>
...............>....>>>>>>>>>>........<<<<..<<<<<<
<<.......>>>.>>>>>..>>>>...<.<........>.>.<<<<<<..
..<<<<<<<<<<<<<.<<<...<<<....>>>...>>>............
............>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<
<<<<..<<<....<<<..<<.....>>..>>>.....>>>...<<<.<<<
<<........>>>>>>>>....>>>>>>>>>...<<<.....>>>.....
.>>>>>>...>..>.>>..<<<<<<....<<<<<....>>>>>.<<<<<<
<....<.<<<<<.<.....<<<...<<..<<<<...<<........>>..
.>>>>..>>..>>.>.....>.>>>>>.>.....>>>>>>.>...<<<<.
<<<<<.........>>>>>>>>>....<<<......>>>...<<<<.<<<
...<<<((......<<<<<<...........<<..<<.<<.<<<<.....
..<<<...<<...<<<<.......>>>>...>>........<<<......
>>>....>>>...>>>>.>>.>>.>>............))......>>>>
>>.>>>...>>>>>>><<<<<<<<<<<.....>>>>>>>>.>>>....>>
>>>>..<<<<<...<<<......<<.<<<<<....>>>>>.>>...>>>.
.>>>>>........>>>>>><......<<.....<<<.<<.......>>.
>>><<<<<....<<....<<...<<<<<<...<<.....>>.>>>>>>..
....<<<<<<....<<....<<<....>>>......>>....>>.....<
<<<......<<..<....<...............................
<.<<...>>...>.....................................
............>...<.<<<.....<........<<<<<<<........
>>.>>>>>.........>.....>>>>...>..>>............>>>
><..<<<<<.........>>>>>.>......>>>>..>>.....<<....
..>>...>>.<<<<.....>>>>.>>>>>..<<.<....<<<<<<<<.<<
...............<<<<<...............>>>>><<<.<<<<<<
......>.>>>>>.>>>............<<<<<<<<<..<<<.......
..>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.
<<<..<<<<<<<...<<........<<<<<.......>>>>>........
>>.>>>>>..>>>>><<<<<<.......>>>>>>........<.......
....<<<<<.......>>>>>.....>....>>>>>..>>.>>>>>>>..
...>>.>>>>>>>>.>.>>>>.....>.....<<<<<........>>>>>
..<<<<<<<.<<<<.<<......<<<<.<<<<<<..<<<<<.<<<<<<<<
<.<.<<.<<<<<..<<<..............<<<...<............
....>.............>>>.....>>>..>>>>>.>>.>...<<<<<.
.>>>>>....>>>>>>>>>..>>>>>..<<<<.....>>>><<<<<<...
........>>>>>>..<<...<<<<<<<...<<<.........>>>....
.<..[.(((.>....>>>>>>>...<<<<..<<<<....>>>>..>>>>.
<<<....>>>.>>)))]......<<<<<<<.<<..))))..>>>>>>>>>
.............>>>>..>>>>>>.......<<<<.<.<<<<<<...<<
.......>>...>>>>>>...>>>>.>.......<<<<<..<<<<<..<<
<<<<<<<......>>>>>>..>>>.<<<<.......>>>>.....>>>>>
......>>>.>>....<<<<<<<....>>>.>>>>....>>..>>>>>>>
>>>>.........<<<<<<...<<<<..<<<<<<<...............
>>>>>>><<<<<<...<<<<...<<<<<<<<<<<....>>>>>>..>>>>
>...>>>>.>>>>>><.<<<....<<<<<....>>>>>....>>>>>>>>
.......>>>>>>......<<<<<.......>>>>>....<<<<<<<<<<
<<....<<<<<....>>>>>...>>>.>>>>>>.>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6xyw Cryo-EM structure of the RNA-rich plant mitochondrial ribosome.
Resolution3.86 Å
Binding residue
(original residue number in PDB)
R5 L7 G8 A11 H13 M15 S16 R19 T20 Q24 H28 E32 T33 T34 T36 K39 E40 R42 R43 N47 Q50 R61 R68 R87 G89 G90 T92 R93 L94 R96 V101 D103 A104 A105 K123 Q128 Q131 P134
Binding residue
(residue number reindexed from 1)
R2 L4 G5 A8 H10 M12 S13 R16 T17 Q21 H25 E29 T30 T31 T33 K36 E37 R39 R40 N44 Q47 R58 R65 R84 G86 G87 T89 R90 L91 R93 V98 D100 A101 A102 K120 Q125 Q128 P131
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6xyw, PDBe:6xyw, PDBj:6xyw
PDBsum6xyw
PubMed32251374
UniProtQ8LD39

[Back to BioLiP]