Structure of PDB 4v5z Chain Am Binding Site BS01

Receptor Information
>4v5z Chain Am (length=140) Species: 9615 (Canis lupus familiaris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED
EVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLE
RLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
Ligand information
>4v5z Chain AA (length=1391) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauaagccau
gcaugucuaguacgcacggccgguacagugaaacugcgaauggcucauua
aaucaguuaugguuccuuggucgccuuggauaacugugguaaucuagagc
uaauacaugccgacgcgcugaccgggaugcgugcauucgcgcgacgaccc
aucgaacgucugcccuaucaacuucaugguagucgccgugccuaccaugg
ugaccacggguacggggaaucaggguucgauuccggagagggagccugag
aaacggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccacuc
ccgacccggggagguagugacgaaaaauaaugaguccacuuuauccuuua
acgaggauccauggagggcaagcuggugccagcagccgcgguaauuccag
cuccauagcguauauuaaaguugcugcaguuaaaaagcucguaguugggg
gcgggcgggcgguaccgcccguccccgccccgggacggccgggggcauuc
guauugcgccgcuagaggugaaauuccuugaccggcgcaagacggaccag
agcgaaagcauuugccaagaauguuuucauuaaucaagaacgaaagucgg
agguucgaagacgaucagauaccgucguaguuccgaccauaaacgaugcc
gaccggcgaugcggcggguuauucccaugacccgccgggcagcuucggga
aaccagucgguuccgggggaguaugguugcaaagcugaaacuuaaaggaa
uugacggaagggcacaccaggaguggagccugcggcuuaauuugacucaa
cacgggaaaccucacccggcccggacacggagacagaugauacucuuucu
ccguggugguggugcauggccguucuuaguugguggagcgauuugucugg
uuaauuccgauaacgaacgagacucuggcaucuaacuucuuagagggaca
aguggcguuagccacccgagauugagcaauaacaggucuguaugcccuug
auguccggggcugcacgcgcgcuacacugacugucagcgugucuauacgc
ggcagcgcuaacccguugaaccccauucgugauggggaucggggauugca
auuauuccccaugaacgaggaauucccaguaagugcgggucauaagcuug
cguugauuaagucccugcccuuuguacacaccgcccgucgcuacuaccga
ggaugguuuagugaggcccucggaucggcccgccggggucggcccacggc
ccuggcgggcugagaagacggucgaacuugacuaucugaggaaguaaaag
ucguaacaagguuuccguaggugaaccugcggaaggaucau
...<<<<<{[[((((>>>>><<<.<<<<<<...<.<<...<....<<<.<
<<.{.<...<<><(...<.....>...>)....><>.{.....<<<...(
.({<<<<<.<.[.....<<<<(<.<.<<.[<<.<<.<<......>>.>>.
...>>>>.>....<<<<<...<<>>)..>>>>>..]<<<<>>>>>.>.>>
>..>>>...>>>.<<<.....<)).{<<<<<<..<]..}.>>>>>>>..>
.......>>>..<<<<<<<<{[[.>>>>}}.>>>>>>>..<.<<..<...
...}>.>>.><.(.<<....>>>>).(>>>>>>.......).<<<.}.<<
<<<...>>>>>.>>>..>...>>.>......(..<<.<........>.).
..>>.......<<<<<(((.[.<<<<........))).......].>>>>
>>>>>..>>>>>>{>>>...<..]].<.<((..><.(.<<...<<<.<<<
<<<<<<<<<<<<<>>>>>>>>..>>>>>>..<<<<<<..<...<<<<..<
<<.<<<<<<<<...<<<......>>>......>>>>>>>>.>>>.....<
.<<....>>.>.>>>>..>..>>>>.>>...>>>..<>>.)...(<<<<<
<<...<...<<<<.........>>>>.).>>>>>>>>..........<<<
<<>>.<<..<.(<<.<.<.....<....>..>>)>>..>..>>...<<..
))>>..>>>>>>>.>..<<.....<<<>.....>>>....>>}..)))).
]]<<<<..<<<<<<.<<..<<.<<(<<<<.<<<<........<.......
)..>.<.....>..<<<<<<.......<<<<<<.<<<....(.>>>.>>>
>>>....<<.(<<.)<<(<<.<<<....<<<.<.<<<....>>>...<<<
.(....>>>....>.>>>..)..<(<..<.<<<<<..(.>>>>>.>...(
.<<<<<..).>>>>>...)....>>)....>>>..>>..>).>>>>.>..
..>)>>>>>......>>>>.>>>.>...<<..<...<.(<<..<<..<<<
....>>>.>>...>>>)....>....>>.....<....<.<(<<<.....
....>)>>.>>....>.....>>>.>...<<<<<<<<<<.......>>>>
>>>>...>>.>>...>>>>>>.>>>.>.....<..<<.<..(<<<.<<..
<<<<<<<<.<<<...<<.<<<...<<<<.<<<<<.<<<<<.......>>.
>>>>>>.>>>>>>...>>.>>>...>>>.>>>>>>>>..>>)>>>}...>
.>>...>.....<<<<<<<<<....>>>>>>>>>.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v5z Structure of the Mammalian 80S Ribosome at 8.7 A Resolution
Resolution8.7 Å
Binding residue
(original residue number in PDB)		R24 F28 K34 V36 R39 Y40 R55 P80 W82 R86 D89 K91 Q97 W127 R130 K137 T139 G140 R141 R142 G143 R144 K150 K152
Binding residue
(residue number reindexed from 1)		R12 F16 K22 V24 R27 Y28 R43 P68 W70 R74 D77 K79 Q85 W115 R118 K125 T127 G128 R129 R130 G131 R132 K138 K140
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 01:56:15 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v5z', asym_id = 'Am', bs = 'BS01', title = 'Structure of the Mammalian 80S Ribosome at 8.7 A Resolution'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v5z', asym_id='Am', bs='BS01', title='Structure of the Mammalian 80S Ribosome at 8.7 A Resolution')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003676,0003723,0003735,0005840,0006412', uniprot = '', pdbid = '4v5z', asym_id = 'Am'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0003723,0003735,0005840,0006412', uniprot='', pdbid='4v5z', asym_id='Am')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>