Structure of PDB 4v6w Chain Ah Binding Site BS01

Receptor Information
>4v6w Chain Ah (length=58) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YGNKESNGEFGNELPQRQFNNRDNRGPPRVRTGEKFGKREFKEEPKEMTL
DEWKAIQN
Ligand information
>4v6w Chain B2 (length=1957) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auucugguugauccugccaguaguuauaugcuugucucaaagauuaagcc
augcaugucuaaguacacacgaauuaaaagugaaaccgcaaaaggcucau
uauaucaguuaugguuccuuagaucguuaacaguuacuuggauaacugug
guaauucuagagcuaauacaugcaauuaaaacaugaaccuuaugggacgu
gugcuuuuauuaggcuaaaaccaagcgaucgcaagaucguuauauugguu
gaacucuagauaacaugcagaucguauggucuuguaccgacgacagaucu
uucaaaugucugcccuaucaacuuuugaugguaguaucuaggacuaccau
gguugcaacggguaacggggaaucaggguucgauuccggagagggagccu
gagaaacggcuaccacaucuaaggaaggcagcaggcgcguaaauuaccca
cucccagcucggggagguagugacgaaaaauaacaauacaggacucauau
ccgaggcccuguaauuggaaugaguacacuuuaaauccuuuaacaaggac
caauuggagggcaagucuggugccagcagccgcgguaauuccagcuccaa
uagcguauauuaaaguuguugcgguuaaaacguucguaguugaacuugug
cuucauacggguaguauacuauaccuuuauguauguaagcguauuaccgg
uggaguucuuauaugugaucauauguuccuccuauuuaaaaaccugcauu
agugcucuuaaacgaguguuauugugggccgguacuauuacuuugaacaa
auuagagugcuuaaagcaggcuucaaaugccugaauauucugugcauggg
auaaugaaauaagaccucuguucugcuuucauugguuuucagaucaagag
guaaugauuaauagaagcaguuugggggcauuaguauuacgacgcgagag
gugaaauucuuggaccgucguaagacuaacuuaagcgaaagcauuugcca
aagauguuuucauuaaucaagaacgaaaguuagagguucgaaggcgauca
gauaccgcccuaguucuaaccauaaacgaugccagcuagcaauugggugu
agcuacuuuuauggcucucucagucgcuuccgggaaaccaaagcuuuuug
ggcuccgggggaaguaugguugcaaagcugaaacuuaaaggaauugacgg
aagggcaccaccaggaguggagccugcggcuuaauuugacucaacacggg
aaaacuuaccaggucgaacauaaguguguaagacagauugauagcucuuu
cucgaaucuaugggugguggugcauggccguucuuaguucguggagugau
uugucugguuaauuccgauaacgaacgagacucaaauauauuaaauagau
aucuucaggauuauggugcugaagcuuauguagccuucauucauguuggc
aguaaaaugcuuauuguguuugaauguguuuauguaaguggagccguacc
uguugguuugucccauuauaaggacacuagcuucuuaaauggacaaauug
cgucuagcaauaaugagauugagcaauaacaggucugugaugcccuuaga
uguccugggcugcacgcgcgcuacaaugaaaguaucaacguguauuuccu
agaccgagagguccggguaaaccgcugaaccacuuucaugcuugggauug
ugaacugaaacuguucacgaugaacuuggaauucccaguaagugugaguc
auuaacucgcauugauuacgucccugcccuuuguacacaccgcccgucgc
uacuaccgauugaauuauuuagugaggucuccggacgugaucacugugac
gccuugcguguuacgguuguuucgcaaaaguugaccgaacuugauuauuu
agaggaaguaaaagucguaacaagguuuccguaggugaaccugcggaagg
aucauua
...<<<<<...[[[[>>>>>[[[[.((((((................{{{
.{{{..<<....<<....<<.........>>...>>.>>...........
.....{{{.{{{..{{....[[[[..............<<.....<<.<<
<.....>>>.>>......>>..........<<<<<............>>>
>>[[..(((((.....<<<<<<<<.<<<<<....>>>>>...........
........)))))...]]...<<<<.<<<<.....>>>>>>>>...]]]]
...}}}}}.}}}.<<<....<<<....<<<<<<<<.......>>>>>>>>
>>>......>>>...<<<.<<<<....>>>>....>>>....<<.<<<..
........>>>.>>.<.<<....>>.>...}}}}}}.........<<<..
..<<<.....>>>..>>>...............<<<<<<<<<.<<<....
..>>>..>>>>>>.>>>...<..<<<.<...........>>.>>>.....
...<<<<<((......<<<<.....<<..))>>.......>>>>.>>>>>
..))))))]]]].........{{{{{.....[[[[...[[[.[[.....<
<<<.<<<<.<<<<<<<>>>>..>>.>....>>>>..>>>>....<<<<<<
.<<<<.....<<<<<<<<>>>>>>>>..>>>>..........<<<<<<.<
<<<<<<<......>>>>>>>>.>>>>>>>>>>>>..<<<<<<.<<.....
..<<...<.......>..<<<.......>>>....>>.......>>.>>.
.>>>>........((((((.(..(.......>>>>>>>>...)..)))))
)).....]]....<<<<..<<<<...<<<<..<<<.<<<<<<<<.<.<<<
......>>>.....>>>>>>>>>.>>>.......<<....>>...>>>>.
.>>>>.>.>>>...]]]...]]]]....<<<<<<<...<...<<<<.<..
...>.>>>>...>>>>>>>>..........<<<.<<.<<<..<<<<<.<.
.<<<<......>>>>.>.>>>>>..>>>...<<..}}>>...>>......
>>>.}}}.<<<......<<<<....>>>>....>>>..]]]]..<<<<<.
<<<<<<<..<<..<<<<<..<<<.<<<<<<......<<........>>..
........<<<<<.<...<<<<........<<<.<<<........>>>.>
>>......>>>>...<<.<<<..<<.<<<<<<....<<<<<<<<<....>
>>...<<<......>>>...>>>>>>....<<<<<.<<..<<<<..<<..
<<<..<<<<..<<<<<<......<<<<<<<<<<<.<<<<..<<<<<.<<<
<......>>>>.>>.>>>..>>>>...>.>>>>>>>>>>...>>>>>>>>
>>..>>>..<<<<........>>>>.....>>..>>>>.>>.....<<<<
<.....>>>>>.......>>>>>....>>>.>>>.....>>>>>>>....
.>.>>>>>...>>.>>>>.>>>.....<<<<<<........<.....<<<
.<<<<....>>>>.>>>....>.........>>>>>>.............
...<..........>...............>>>>>.....<<<<<<<<..
.....>>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<..
<<<<.<<....<<<<.<<<.<<<..<<<<..<.....<<<.<<<<<<<<<
<.<....>>>>>>>>>.>>..>>>.....>..>>>>..>>>.>>>.>>>>
...>>.>>>>...>.>>...>.....<<<<<<<<<....>>>>>>>>>..
.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v6w Structures of the human and Drosophila 80S ribosome.
Resolution6.0 Å
Binding residue
(original residue number in PDB)
Y108 N110 F117 G118 N119 L121 Q123 Q125 F126 N127 N128 R129 N131 R132 P134 P135 R136 E141
Binding residue
(residue number reindexed from 1)
Y1 N3 F10 G11 N12 L14 Q16 Q18 F19 N20 N21 R22 N24 R25 P27 P28 R29 E34
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:4v6w, PDBe:4v6w, PDBj:4v6w
PDBsum4v6w
PubMed23636399
UniProtQ9VBX3

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