Structure of PDB 6xu6 Chain Af Binding Site BS01

Receptor Information
>6xu6 Chain Af (length=80) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKKRKKKNYSTPKKIKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGENC
GAGVFMAAHEDRHYCGKCNLTFVFSKPEEK
Ligand information
>6xu6 Chain B2 (length=1936) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auucugguugauccugccaguaguuauaugcuugucucaaagauuaagcc
augcaugucuaaguacacacgaauuaaaagugaaaccgcaaaaggcucau
uauaucaguuaugguuccuuagaucguuaacaguuacuuggauaacugug
guaauucuagagcuaauacaugcaauuaaaacaugaaccuuaugggacgu
gugcuuuuauuaggcuaaaaccaagcgaucgcaagaucguuauauugguu
gaacucuagauaacaugcagaucguauggucuuguaccgacgacagaucu
uucaaaugucugcccuaucaacuuuugaugguaguaucuaggacuaccau
gguugcaacggguaacggggaaucaggguucgauuccggagagggagccu
gagaaacggcuaccacaucuaaggaaggcagcaggcgcguaaauuaccca
cucccagcucggggagguagugacgaaaaauaacaauacaggacucauau
ccgaggcccuguaauuggaaugaguacacuuuaaauccuuuaacaaggac
caauuggagggcaagucuggugccagcagccgcgguaauuccagcuccaa
uagcguauauuaaaguuguugcgguuaaaacguucguaguugaacuugug
cuucauacggguaguauacuauaccuuuauguauguaagcguauuaccgg
uggaguucuuauaugugaucauauguuccuccuauuuaaaaaccugcauu
agugcucuuaaacgaguguuauugugggccgguacuauuacuuugaacaa
auuagagugcuuaaagcaggcuucaaaugccugaauauucugugcauggg
auaaugaaauaagaccucuguucugcuuucauugguuuucagaucaagag
guaaugauuaauagaagcaguuugggggcauuaguauuacgacgcgagag
gugaaauucuuggaccgucguaagacuaacuuaagcgaaagcauuugcca
aagauguuuucauuaaucaagaacgaaaguuagagguucgaaggcgauca
gauaccgcccuaguucuaaccauaaacgaugccagcuagcaauugggugu
agcuacuuuuauggcucucucagucgcuuccgggaaaccaaagcuuuuug
ggcuccgggggaaguaugguugcaaagcugaaacuuaaaggaauugacgg
aagggcaccaccaggaguggagccugcggcuuaauuugacucaacacggg
aaaacuuaccaggucgaacauaaguguguaagacagauugauagcucuuu
cucgaaucuaugggugguggugcauggccguucuuaguucguggagugau
uugucugguuaauuccgauaacgaacgagacucaaauauauuaaauagau
aucuucaggauuauggugcugaagcuuauguagccuucauuauuguguuu
gaauguguuuauguaaguggagccguaccuguugguuugucccauuauaa
ggacacuagcuucuuaaauggacaaauugcgucuagcaauaaugagauug
agcaauaacaggucugugaugcccuuagauguccugggcugcacgcgcgc
uacaaugaaaguaucaacguguauuuccuagaccgagagguccggguaaa
ccgcugaaccacuuucaugcuugggauugugaacugaaacuguucacgau
gaacuuggaauucccaguaagugugagucauuaacucgcauugauuacgu
cccugcccuuuguacacaccgcccgucgcuacuaccgauugaauuauuua
gugaggucuccggacgugaucacugugacgccuugcguguuacgguuguu
ucgcaaaaguugaccgaacuugauuauuuagaggaaguaaaagucguaac
aagguuuccguaggugaaccugcggaaggaucauua
...<<<<<.{.((((>>>>><<<<.<<<<<<...<.<<..<......<<<
.<<<..<<....<<....................>>.>>......<<...
.....<<<.<<<..<<....<<<...............<<.....<<.<<
.......>>.>>......>>...........<<<<............>>>
>.<<<.<<<<<......((...{...<<<<....>>>>............
........>>>>>.>.>>...<.<<.............>.>>.....>>>
...>>>>>.>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>
>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<..
........>>>.>>.<.<<....>>.>...>>>>>>.........<<<..
..<<<.....>>>..>>>..>...>>.>.....<<<...<<<..<<....
..>>...>>>....>>>.................................
...<<<<<((......<<<<.....<<..))>>.......>>>>.>>>>>
..>>>>>>>>>>.........<<<[[.....<<<<...<<<.<<.....<
<<<.................................>>>>....<<<<<.
..<...........................>...........<.......
..........................>..>>>>>..<<<<<<.<<.....
..<<...<.......>..<...........>....>>.......>>.>>.
.>>>>..........................}....))............
.......>>....<<<<<.<.<<...<<<<..<<..<<<<<<<<.<.<<<
......>>>.....>>>>>>>>>..>>.......<<....>>...>>>>.
..>>>>>.>>>...>>>...>>>>....<<<<<<<...<...<<<<.<..
...>.>>>>...>>>>>>>>..........<<<.<<.<<<.<<<<<<.<.
.<<<<......>>>>.>.>>>>>>.>>>...<<..]]>>...>>......
>>>.>>>.<<<......<<<<....>>>>....>>>..)))).}......
<<.<<<...<<..<<<<<..<<<.<<<<........<<........>>..
........<<<<<..................<<..<<........>>..>
>............<.<<.<<<..<<.<<<<<<....<<<...<<......
>>...<<<......>>>......>>>....<<<.......<<....<<..
.......<<....<<..........<<<<<<...................
..........>>>>>>.......>>..>>.........<<..........
..>>.....>>....>>................................>
>>....>>>.>>>.....>>>>>>>>......>>>>>......>>>>.>>
>.....<<<<<.........<.....<<..<<<<....>>>>..>>....
>..........>>>>>...........<....<..........>....>.
.........>>>>>.....<<<<<<<<.......>>>>>>>>......>>
....>>>.>>..........<..<<.<..<<<<.<<....<<<<.<<<.<
<<..<<<<..<....<<<<.<<<...<<<.........>>>..>..>>..
>>>>....>..>>>>..>>>.>>>.>>>>...>>.>>>>...>.>>...>
.....<<<<<<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6xu6 Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		A77 K78 K79 R80 K82 K83 S86 T87 K90 K92 H93 K94 R95 K96 K97 K99 L100 V102 K104 V130 F131 A133 A134 H135 R138 Y140 G142 N145 L146
Binding residue
(residue number reindexed from 1)		A1 K2 K3 R4 K6 K7 S10 T11 K14 K16 H17 K18 R19 K20 K21 K23 L24 V26 K28 V54 F55 A57 A58 H59 R62 Y64 G66 N69 L70
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6xu6, PDBe:6xu6, PDBj:6xu6
PDBsum6xu6
PubMed34283226
UniProtP15357|RS27A_DROME Ubiquitin-ribosomal protein eS31 fusion protein (Gene Name=RpS27A)

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