Structure of PDB 8q87 Chain Ae Binding Site BS01

Receptor Information
>8q87 Chain Ae (length=191) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRK
AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLV
NAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF
RNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR
Ligand information
>8q87 Chain A2 (length=1697) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca
ugcaugucuaaguacacacgggcgguacagugaaacugcgaauggcucau
uaaaucaguuaugguuccuuuggucgcuccuacuuggauaacugugguaa
uucuagagcuaauacaugccgacgagcgccgaccuccggggacgcgugca
uuuaucaguggugacucuagauaaccucgagccgaucgcacgcccccgug
gcggcgacgacccauucgaaugucugcccuaucaacuuucgaugguacug
ucugugccuaccauggugaccacggguaacggggaaucaggguucgauuc
cggagagggagccugagaaacggcuaccacauccaaggaaggcagcaggc
gcgcaaauuacccacucccgacccggggagguagugacgaaaaauaacaa
uacaggacucuuucgaggcccuguaauuggaaugaguccacuuuaaaucc
uuuaacgaggauccauuggagggcaagucuggugccagcagccgcgguaa
uuccagcuccaauagcguauauuaaaguugcugcaguuaaaaagcucgua
guuggaucuugggaucgagcugccgccugucccaggucucucggcgcccc
ggggcccgaagcguuuacuuugaaaaaauuagaguguucaaagcaggcug
gccgccggaauacuccagcuaggaauaauggaauaggacuccgguucuau
uuuguugguuuucggaaacggggccaugauuaagagggacggccgggggc
auucguauugugccgcuagaggugaaauucuuggaccggcgcaagacgaa
cuaaagcgaaagcauuugccaagaauguuuucauuaaucaagaacgaaag
ucggagguucgaagacgaucagauaccgucguaguuccgaccauaaacga
ugccgacucgcgauccggcggcguuauucccaugacccgccgggcagcuc
ccgggaaacccaagucuuuggguuccggggggaguaugguugcaaagcug
aaacuuaaaggaauugacggaagggcaccaccaggaguggagccugcggc
uuaauuugacucaacacgggaaaccucacccggcccggacacggacagga
uugacagauugagagcucuuucucgauuccgugggugguggugcauggcc
guucuuaguugguggagcgauuugucugguuaauuccgauaacgaacgag
acucuggcaugcuaacuaguuacgcgacccccgagcggucggcguccaac
uucuuagagggacaaguggcguucagccacccgagauugagcaauaacag
gucugugaugcccuuagauguccggggcugcacgcgcgcuacacugacug
gcucagcuugugucuacccuacgccggcaggcgcggguaacccguugaac
cccauucgugauggggaucggggauugcaauuauuccccaugaacgagga
auucccaguaagugcgggucauaagcucgcguugauuaagucccugcccu
uuguacacaccgcccgucgcuacuaccgauuggaugguuuagugaggucc
ucggaucggccgucgagaagacggucgaacuugacuaucuagaggaagua
aaagucguaacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<.[.((((>>>>><<<.<<<<<<...<.<<..<......<<<.
<<<..<<....<<....<<..........>>...>>.>>......<<...
.....<<<.<<<..<<....<<<<<.........<<.....<<.<<<...
..>>>.>>......>>.........<<<<...<<<..>>>...>>>><<.
.<<<<<...<......>..>>>>>......>>...<<<<.<<<<.....>
>>>>>>>.>>.>>>...>>>>>.>>>.<<<....<<<....<<<<<<...
........>>>>>>>>>......>>>...<<<.<<<<....>>>>....>
>>.>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>>>
.........<<<....<<<<...>>>>..>>>..>...>>.>.....<<<
<<<<<<.<<<....>>>..>>>>>>.>>>......<<..<..........
.>..>>.........<<<<<((....<.<<<<.....<<..))>>.....
..>>>>>>>>>>..>>>>>>.>>>.........<.<((.....<.<<...
<<<.<<.....<<..<<.<<....>>.>>..>>...<...<<<..<<<<<
>>>>>.>>>.>...<<<<<<.<.......<<...<.......>..<<<..
...>>>....>>......>.>>>..>>>........<.<<<<<.<<<<..
.............>>>>.>>>>>.>....>>....<<<<<<..<...<<<
<..<<..<<<<<<<<...<<<......>>>......>>>>>>>>..>>..
.....<<....>>...>>>>..>..>>>.>>>...>>>...>>.>....<
<<<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>.........
.<<<.<<..<<..<<<<<<<<.<<<<<....>>>>>>>>>>>>>..>>..
..<<..))>>...>>.....>>>.>.>.<<<......<<<<....>>>>.
...>>>..)))).]<<<<<.<<<<<<<..<<..<<<<<..<<<.<<<<<.
......<<........>>..........<<<<<.<....<<<<<<.....
..<<.<<<........>>>.>>.....>>>>>>...<<.<<<..<<.<<<
<<<....<<<.<<<<<....>>>...<<<......>>>...>>.>>>...
.<<<...<...<<<<..<<<<<<<<<<<<.......>>>>.>>>>..>>>
>..>>>>..>.....<<<<<.....>>>>>........>>>....>>>.>
>>.....>>>>>>>.....>.>>>>>....>.>>>>.>>>.....<<.<<
<........<.......<<<.<<<<....>>>>.>>>....>........
.>>>.>>......<.....<<<<<..........>>>>>.....>.....
>>>>>.....<<<<<<<<.......>>>>>>>>......>>...>>>>>>
>>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.<<<..<<<<.
<<...<<<<...>>>>...>>.>>>>..>>>.>>>>>>>>...>>.>>>>
...>.>>...>.....<<<<<<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.4 Å
Binding residue
(original residue number in PDB)
H50 A56 K58 R59 K62 R70 N73 M75 M77 H78 G79 R80 N81 N82 G83 K84 K85 M87 N147 W151 R158 F162 R163 N164 I165 T167 I168
Binding residue
(residue number reindexed from 1)
H38 A44 K46 R47 K50 R58 N61 M63 M65 H66 G67 R68 N69 N70 G71 K72 K73 M75 N135 W139 R146 F150 R151 N152 I153 T155 I156
External links
PDB RCSB:8q87, PDBe:8q87, PDBj:8q87
PDBsum8q87
PubMed
UniProtG1TFM5|RS5_RABIT Small ribosomal subunit protein uS7 (Gene Name=RPS5)

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