Structure of PDB 4v5z Chain Ae Binding Site BS01

Receptor Information
>4v5z Chain Ae (length=148) Species: 9615 (Canis lupus familiaris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLKDEVLKIVPVQKQTRAGQRTRFKAFVAIGDHNGHVGLGVKCSKEVATA
IRGAIILAKLSIVPVRGYWGNKIGKPHTVPCKVTGRSGSVPVRLIPAPRG
TGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYS
Ligand information
>4v5z Chain AA (length=1391) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauaagccau
gcaugucuaguacgcacggccgguacagugaaacugcgaauggcucauua
aaucaguuaugguuccuuggucgccuuggauaacugugguaaucuagagc
uaauacaugccgacgcgcugaccgggaugcgugcauucgcgcgacgaccc
aucgaacgucugcccuaucaacuucaugguagucgccgugccuaccaugg
ugaccacggguacggggaaucaggguucgauuccggagagggagccugag
aaacggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccacuc
ccgacccggggagguagugacgaaaaauaaugaguccacuuuauccuuua
acgaggauccauggagggcaagcuggugccagcagccgcgguaauuccag
cuccauagcguauauuaaaguugcugcaguuaaaaagcucguaguugggg
gcgggcgggcgguaccgcccguccccgccccgggacggccgggggcauuc
guauugcgccgcuagaggugaaauuccuugaccggcgcaagacggaccag
agcgaaagcauuugccaagaauguuuucauuaaucaagaacgaaagucgg
agguucgaagacgaucagauaccgucguaguuccgaccauaaacgaugcc
gaccggcgaugcggcggguuauucccaugacccgccgggcagcuucggga
aaccagucgguuccgggggaguaugguugcaaagcugaaacuuaaaggaa
uugacggaagggcacaccaggaguggagccugcggcuuaauuugacucaa
cacgggaaaccucacccggcccggacacggagacagaugauacucuuucu
ccguggugguggugcauggccguucuuaguugguggagcgauuugucugg
uuaauuccgauaacgaacgagacucuggcaucuaacuucuuagagggaca
aguggcguuagccacccgagauugagcaauaacaggucuguaugcccuug
auguccggggcugcacgcgcgcuacacugacugucagcgugucuauacgc
ggcagcgcuaacccguugaaccccauucgugauggggaucggggauugca
auuauuccccaugaacgaggaauucccaguaagugcgggucauaagcuug
cguugauuaagucccugcccuuuguacacaccgcccgucgcuacuaccga
ggaugguuuagugaggcccucggaucggcccgccggggucggcccacggc
ccuggcgggcugagaagacggucgaacuugacuaucugaggaaguaaaag
ucguaacaagguuuccguaggugaaccugcggaaggaucau
...<<<<<{[[((((>>>>><<<.<<<<<<...<.<<...<....<<<.<
<<.{.<...<<><(...<.....>...>)....><>.{.....<<<...(
.({<<<<<.<.[.....<<<<(<.<.<<.[<<.<<.<<......>>.>>.
...>>>>.>....<<<<<...<<>>)..>>>>>..]<<<<>>>>>.>.>>
>..>>>...>>>.<<<.....<)).{<<<<<<..<]..}.>>>>>>>..>
.......>>>..<<<<<<<<{[[.>>>>}}.>>>>>>>..<.<<..<...
...}>.>>.><.(.<<....>>>>).(>>>>>>.......).<<<.}.<<
<<<...>>>>>.>>>..>...>>.>......(..<<.<........>.).
..>>.......<<<<<(((.[.<<<<........))).......].>>>>
>>>>>..>>>>>>{>>>...<..]].<.<((..><.(.<<...<<<.<<<
<<<<<<<<<<<<<>>>>>>>>..>>>>>>..<<<<<<..<...<<<<..<
<<.<<<<<<<<...<<<......>>>......>>>>>>>>.>>>.....<
.<<....>>.>.>>>>..>..>>>>.>>...>>>..<>>.)...(<<<<<
<<...<...<<<<.........>>>>.).>>>>>>>>..........<<<
<<>>.<<..<.(<<.<.<.....<....>..>>)>>..>..>>...<<..
))>>..>>>>>>>.>..<<.....<<<>.....>>>....>>}..)))).
]]<<<<..<<<<<<.<<..<<.<<(<<<<.<<<<........<.......
)..>.<.....>..<<<<<<.......<<<<<<.<<<....(.>>>.>>>
>>>....<<.(<<.)<<(<<.<<<....<<<.<.<<<....>>>...<<<
.(....>>>....>.>>>..)..<(<..<.<<<<<..(.>>>>>.>...(
.<<<<<..).>>>>>...)....>>)....>>>..>>..>).>>>>.>..
..>)>>>>>......>>>>.>>>.>...<<..<...<.(<<..<<..<<<
....>>>.>>...>>>)....>....>>.....<....<.<(<<<.....
....>)>>.>>....>.....>>>.>...<<<<<<<<<<.......>>>>
>>>>...>>.>>...>>>>>>.>>>.>.....<..<<.<..(<<<.<<..
<<<<<<<<.<<<...<<.<<<...<<<<.<<<<<.<<<<<.......>>.
>>>>>>.>>>>>>...>>.>>>...>>>.>>>>>>>>..>>)>>>}...>
.>>...>.....<<<<<<<<<....>>>>>>>>>.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v5z Structure of the Mammalian 80S Ribosome at 8.7 A Resolution
Resolution8.7 Å
Binding residue
(original residue number in PDB)		Q21 K22 R25 R29 G97 S98 C137 T138 T140
Binding residue
(residue number reindexed from 1)		Q13 K14 R17 R21 G88 S89 C128 T129 T131
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 21:17:59 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v5z', asym_id = 'Ae', bs = 'BS01', title = 'Structure of the Mammalian 80S Ribosome at 8.7 A Resolution'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v5z', asym_id='Ae', bs='BS01', title='Structure of the Mammalian 80S Ribosome at 8.7 A Resolution')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0015935', uniprot = '', pdbid = '4v5z', asym_id = 'Ae'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0015935', uniprot='', pdbid='4v5z', asym_id='Ae')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>