Structure of PDB 8q87 Chain Ab Binding Site BS01

Receptor Information
>8q87 Chain Ab (length=219) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGSSLKDEVL
KIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIIL
AKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSA
PVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWK
ETVFTKSPYQEFTDHLAKT
Ligand information
>8q87 Chain A2 (length=1697) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugguugauccugccaguagcauaugcuugucucaaagauuaagcca
ugcaugucuaaguacacacgggcgguacagugaaacugcgaauggcucau
uaaaucaguuaugguuccuuuggucgcuccuacuuggauaacugugguaa
uucuagagcuaauacaugccgacgagcgccgaccuccggggacgcgugca
uuuaucaguggugacucuagauaaccucgagccgaucgcacgcccccgug
gcggcgacgacccauucgaaugucugcccuaucaacuuucgaugguacug
ucugugccuaccauggugaccacggguaacggggaaucaggguucgauuc
cggagagggagccugagaaacggcuaccacauccaaggaaggcagcaggc
gcgcaaauuacccacucccgacccggggagguagugacgaaaaauaacaa
uacaggacucuuucgaggcccuguaauuggaaugaguccacuuuaaaucc
uuuaacgaggauccauuggagggcaagucuggugccagcagccgcgguaa
uuccagcuccaauagcguauauuaaaguugcugcaguuaaaaagcucgua
guuggaucuugggaucgagcugccgccugucccaggucucucggcgcccc
ggggcccgaagcguuuacuuugaaaaaauuagaguguucaaagcaggcug
gccgccggaauacuccagcuaggaauaauggaauaggacuccgguucuau
uuuguugguuuucggaaacggggccaugauuaagagggacggccgggggc
auucguauugugccgcuagaggugaaauucuuggaccggcgcaagacgaa
cuaaagcgaaagcauuugccaagaauguuuucauuaaucaagaacgaaag
ucggagguucgaagacgaucagauaccgucguaguuccgaccauaaacga
ugccgacucgcgauccggcggcguuauucccaugacccgccgggcagcuc
ccgggaaacccaagucuuuggguuccggggggaguaugguugcaaagcug
aaacuuaaaggaauugacggaagggcaccaccaggaguggagccugcggc
uuaauuugacucaacacgggaaaccucacccggcccggacacggacagga
uugacagauugagagcucuuucucgauuccgugggugguggugcauggcc
guucuuaguugguggagcgauuugucugguuaauuccgauaacgaacgag
acucuggcaugcuaacuaguuacgcgacccccgagcggucggcguccaac
uucuuagagggacaaguggcguucagccacccgagauugagcaauaacag
gucugugaugcccuuagauguccggggcugcacgcgcgcuacacugacug
gcucagcuugugucuacccuacgccggcaggcgcggguaacccguugaac
cccauucgugauggggaucggggauugcaauuauuccccaugaacgagga
auucccaguaagugcgggucauaagcucgcguugauuaagucccugcccu
uuguacacaccgcccgucgcuacuaccgauuggaugguuuagugaggucc
ucggaucggccgucgagaagacggucgaacuugacuaucuagaggaagua
aaagucguaacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<.[.((((>>>>><<<.<<<<<<...<.<<..<......<<<.
<<<..<<....<<....<<..........>>...>>.>>......<<...
.....<<<.<<<..<<....<<<<<.........<<.....<<.<<<...
..>>>.>>......>>.........<<<<...<<<..>>>...>>>><<.
.<<<<<...<......>..>>>>>......>>...<<<<.<<<<.....>
>>>>>>>.>>.>>>...>>>>>.>>>.<<<....<<<....<<<<<<...
........>>>>>>>>>......>>>...<<<.<<<<....>>>>....>
>>.>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>>>
.........<<<....<<<<...>>>>..>>>..>...>>.>.....<<<
<<<<<<.<<<....>>>..>>>>>>.>>>......<<..<..........
.>..>>.........<<<<<((....<.<<<<.....<<..))>>.....
..>>>>>>>>>>..>>>>>>.>>>.........<.<((.....<.<<...
<<<.<<.....<<..<<.<<....>>.>>..>>...<...<<<..<<<<<
>>>>>.>>>.>...<<<<<<.<.......<<...<.......>..<<<..
...>>>....>>......>.>>>..>>>........<.<<<<<.<<<<..
.............>>>>.>>>>>.>....>>....<<<<<<..<...<<<
<..<<..<<<<<<<<...<<<......>>>......>>>>>>>>..>>..
.....<<....>>...>>>>..>..>>>.>>>...>>>...>>.>....<
<<<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>.........
.<<<.<<..<<..<<<<<<<<.<<<<<....>>>>>>>>>>>>>..>>..
..<<..))>>...>>.....>>>.>.>.<<<......<<<<....>>>>.
...>>>..)))).]<<<<<.<<<<<<<..<<..<<<<<..<<<.<<<<<.
......<<........>>..........<<<<<.<....<<<<<<.....
..<<.<<<........>>>.>>.....>>>>>>...<<.<<<..<<.<<<
<<<....<<<.<<<<<....>>>...<<<......>>>...>>.>>>...
.<<<...<...<<<<..<<<<<<<<<<<<.......>>>>.>>>>..>>>
>..>>>>..>.....<<<<<.....>>>>>........>>>....>>>.>
>>.....>>>>>>>.....>.>>>>>....>.>>>>.>>>.....<<.<<
<........<.......<<<.<<<<....>>>>.>>>....>........
.>>>.>>......<.....<<<<<..........>>>>>.....>.....
>>>>>.....<<<<<<<<.......>>>>>>>>......>>...>>>>>>
>>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.<<<..<<<<.
<<...<<<<...>>>>...>>.>>>>..>>>.>>>>>>>>...>>.>>>>
...>.>>...>.....<<<<<<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q87 Structural insights into inactive ribosome complexes derived from cold-treated chick embryo cells
Resolution2.4 Å
Binding residue
(original residue number in PDB)
M81 Q84 K85 Q86 T87 R88 A89 Q91 R92 R94 K96 K113 K116 T156 R158 G160 S161 L163 R165 V176 S177 A178 Y194 T195 A197 R198 C200 T201 T203 N206 F207 K209
Binding residue
(residue number reindexed from 1)
M53 Q56 K57 Q58 T59 R60 A61 Q63 R64 R66 K68 K85 K88 T128 R130 G132 S133 L135 R137 V148 S149 A150 Y166 T167 A169 R170 C172 T173 T175 N178 F179 K181
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