Structure of PDB 8a22 Chain Ab Binding Site BS01

Receptor Information

>8a22 Chain Ab (length=306) Species: 353565 (Polytomella magna)

GYRPAKPVYPLPDSIASLVEDKIAELKKFGPTPEPALEPLPLTPDSVRVG
CITVKAGMTHEWDEHGVMIPLTVLWIDECQVVGLKYFEKNGYYAVQLGAG
CVKQHTVLPQIAGYYLKHDLPIKREMKEYQVSSPEALLPVGTHITAAHFV
VGQQVDVTGYTTDKGFQGVMKRWGFKGMPASHGVSLSHRKPGATGGRQDP
GKIWKEKKLPGHMGDEKRTQLGLELYKVDPKRNLLYVKGAVPGPRGASIL
VRDSNRMDYEERVALNLPYPTFIGSPDELPVLVRKSDKDPYLMYKKEIDY
FPIKWK

Ligand information

>8a22 Chain A7 (length=534)

aaucguaccgcaaaccaacacagguuaguuauuguaaaggcuguauaaaa
ccaggauaaaggaacucggcaaaauagguuauguuuucguacaaaaccac
aacaaaaguagugacuguuuaccaaaaacacaagacucugcuaacacuua
uaguggaaguauagugucugauaccugcccaaaggcaaagcaaacggcag
cuguaacucuaacggcucuaagguagcaaaauuccauggcauuuaaauga
ugucccgcaugaaugguauaacaacuucuuaacugucucuauucuggauu
aggcgaacuuuaaaugcuugugcagaugcaggcuagcuaacaagggacga
agagacccuaugcagcuuuagggcagguuauuauucaauaaacuaccuuu
uuucugggacggacgcucuuauuaaagaaacaagagugagcaaugguuuu
uacuaauuauaaaaaagaaaagcuuaacugcaauacaaacaauuaaagca
ggggcauugucggcaauaaugcauugaagaaaua

..............<<......>>...................<<.....
<<<<<<<<.<<.........<.....<<<<.<<<......>>>.>>>>..
.....<<<.<<<<..<<<.........>>>..<<<<.<<.....<<<...
..>>>.......>>.>>>>.<<<<<.<<<.....<<...>>....>>><<
<<<<.......>>>>>>........<...........<<<<<<.....>>
>>>>.....>....>>>>>..>>.>>.>>>...>..>>.>>>>>>>>..>
>..............<<<<<........>>>>>.................
...................<<<<..<<<<<<<....>>>>.>>>.>>>>.
..<<<.....>>>.<<<<<<...........>>>>>>..<<...<<<<<<
..<.....((......>.>>>>>>...<<<<..<<........>>..>>>
>.<<<...>>>.>>.)).................

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8a22 Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements.
• Resolution: 2.91 Å
• Binding residue (original residue number in PDB): G98 Y99 R100 F263 G265 S278 H279 L283 H285 R286 T291 G293 Q295 G298 K299
• Binding residue (residue number reindexed from 1): G1 Y2 R3 F166 G168 S181 H182 L186 H188 R189 T194 G196 Q198 G201 K202

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 20:37:08 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8a22', asym_id = 'Ab', bs = 'BS01', title = 'Structure of a mitochondrial ribosome with fragm...rRNA in complex with membrane-targeting elements.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8a22', asym_id='Ab', bs='BS01', title='Structure of a mitochondrial ribosome with fragm...rRNA in complex with membrane-targeting elements.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '8a22', asym_id = 'Ab'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='8a22', asym_id='Ab')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>