Structure of PDB 6eri Chain Ab Binding Site BS01

Receptor Information
>6eri Chain Ab (length=60) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DVRVKVILECTGCVRKSVNKGSRGVSRYITQKNRHNTPSRLELRKFCPYC
YKHTIHGEIK
Ligand information
>6eri Chain AA (length=2696) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucaaacgaggaaaggcuuacgguggauaccuaggcacccagagacgagga
agggcguauuaaucgacgaaaugcuucggggaguugaaaauaagcagaga
uccggagauucccgaauaggucaaccuuucgaacuucugcugaauccaug
ggcaggcaagagacaaccuggcgaacugaaacaucuuaguagccagagga
aaagaaagcaaaagcgauucccguaguagcggcgagcgaaaugggagcag
ccuaaaccgugaaaacgggguugugggagagcaauacaagcgucgugcug
cuaggcgaaucaguggagugcggaacccuagauggugaaaguccaguagc
cgaaagcaucacuagcuuaugcucugacccgaguagcauggggcacgugg
aaucccgugugaaucagcaaggaccaccuugcaaggcuaaauacuccugg
gugaccgauagcgaaguaguaccgugagggaagggugaaaagaaccccca
ucggggagugaaauagaacaugaaaccguaagcucucaagcagugggagg
gggaccagacccugaccgcgugccuguugaagaaugagccggcgacucau
aggcaguggcuugguuaagggaacccaccggagccguagcgaaagcgagu
cuucauagggcaauugucacugcuuauggacccgaaccugggugaucuau
ccaugaccaggaugaagcuugggugaaacuaaguggagguccgaaccgac
ugauguugaagaaucagcggaugaguugugguuaggggugaaaugccacu
cgaacccagagcuagcugguucuccccgaaaugcguugaggcgcagcagu
ugacuggacaucuagggguaaagcacuguuucggugcgggccgcgguacc
aaaucgaggcaaacucugaauacuagauaugaccuccaaauaacaggggu
caaggucggccagugagacgaugggggauaagcuucaucgucgagaggga
aacagcccggaucaccagcuaaggccccuaaaugaccgcucagugauaaa
ggagguaggggugcagagacagccaggagguuugccuagaagcagccacc
cuugaaagagugcguaauagcucacugaucgagcgcucuugcgccgaaga
ugaacggggcuaagcggucugccgaagcugugggauguaaaaaaacaucg
guaggggagcguuccguguuagggagaaacgcgugcgugagccgcguugg
acgaagcggaagcgagaaugucggcuugaguaacgcaaacauuggugaga
auccaaugccccgaaaaccuaaggguuccuccgcaagguucguccacgga
gggugagucagggccuaagaucaggccgaaaggcguagucgauggacaac
aggugaauauuccuguacuaccccuuguuggucccgagggacggaggagg
cuagguuagccgaaagaugguuaucgguucaaggacgcaaggugacccgg
guaagaagggguagagaaaaugccucgagccaauguucgaguaccaggcg
cuacggcgcugaaguaaccgaugccauacucccaggaaaagcucgaacga
ccuucaacaaaaggguaccuguacccgaaaccgacacagguagguaggua
gagaauaccuaggggcgcgagacaacucucucuaaggaacucggcaaaau
agccccguaacuucgggagaaggggugcccccucacaaagggggucgaag
ugaccaggcccgggcgacuguuuaccaaaaacacaggucuccgcaaaguc
guaagaccauguaugggggcugacgccugcccagugccggaaggucaagg
aaguuggugaccugacaggggagccggcgaccgaagccccggugaacggc
ggccguaacuauaacgguccuaagguagcgaaauuccuugucggguaagu
uccgacccgcacgaaaggcguaacgaucugggcacugucucggagagagg
cucggugaaauagacaugucugugaagaugcggacuaccugcaccuggac
agaaagacccuaugaagcuuuacuguucccugggauuggcuuauucuaac
cuugugucaggaccuacgggccaagggacauucucagguagacaguuucu
auggggcguaggccucccaaaagguaacggaggcgugcaaagguuuccuc
gggccggacggagauuggcccucgagugcaaaggcagaagggagcuugac
ugcaagacccacccgucgagcagggacgaaagucggccuuagugauccga
cggugccgaguggaagggccgucgcucaacggauaaaaguuacucuaggg
auaacaggcugaucuuccccaagaguucacaucgacgggaagguuuggca
ccucgaugucggcucuucgccaccuggggcuguaguauguuccaaggguu
gggcuguucgcccauuaaagcgguacgugagcuggguucagaacgucgug
agacaguucgguccauauccggugugggcguuagagcauugagaggaccu
uucccuaguacgagaggaccgggaaggacgcaccucugguguaccaguua
ucgugcccacgguaaacgcuggguagccaagugcggagcggauaacugcu
gaaagcaucuaaguaguaagcccaccccaagaugagugcucuccua
.............<<<<<<<<<<.....<<..<<<<<<<<<<<.<.....
.<<<<<<.....((.>>>.....<<<<<<<..<<.))......>>.....
>>>>>>>...>>>....<<<....>>>......<<<<<<<<.........
>>>>>..>>>.>....<<<<<<.....<......>......>>>>>.>..
.......<<....>>..<<<<<<.....<<.....>>....>>>>>>..<
<<....<<<<....>>>>......<<<<<<<<......<<....<<<.<<
<<.<<<...<<.<<.....>>.>>((......<<<.....))>>>...>>
>...>>>>.>>>....>>..>>>>>..>>>.....<<<<<<<<.......
..>>>>>>>>......<<<<<..<<<<>>>>>..>>>......>>.>>>>
>>>.>>...............<<....>>....>>.........<<<<..
..>>>>..................>>>>>>>>>>........<<<<..<<
<<.......>>>>..>>>>...<.<........>.>.<<<<<<....<<<
<<<<<<<<<...<<<...<<.......>>...>>>...<<....>>..<<
<<.....>>>>.....>>>>>>>>>>>>..<<.<...<<<<<<.....<.
<<<<<<<..<<<....<<<<<<......>>>>>>.....>>>...<<<.<
<<<<........>>>>>>>>....>>>>>>>.>...<<<.....>>>...
...>>>>>>......>.>>..<<<<<<....<<<<<....>>>>><<.<<
<<<<<....<<<<<<......<<...<<<<<<<<...<...........>
...>>>>>>>>..>>.......>>>>>>..<<<<<...........>>>>
>..>>>>>>>..>>..<<<<<<<<<<......>>>>>>>>>>....<<<.
.....>>>...<<<<.<<<...<<<(((.....<<<<<<...........
<<..<<<<<<<<<<.......<.<<<.<<<...<<.........>>...>
>>.........<<......>>...>>>.>...>>>>>>>>>>.>>.....
.....))).....>>>>>>.>>>...>>>>>>><<<<<......>>>>>.
...>>>>>><<<<<<<<...........<<<<<.<<....>>>>>>.>..
.....>>>>>>.>>.....>>>>>><......<<.....<<<<<<.....
..>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>>
>>....((<<<<.<<...<<<...<<<....>>>...>>>...>>...<<
<<<........>>>>>))<<<<<.<<<<.<<<<.<<<<....<<<<..<<
<..<<<<<<<<<<.....(((..>>>>>....<<<<<...<<<.<<....
>>.....<<<<<<.......>>>>>>..>>>..>>>>>.....<..<<<<
<....>>>>>...>>>>>>...>>>...>>>>.........>>>>...>>
>>....>>.>>.>>>>>>>>>..>>.....<<......>>>>>>>.<<<<
.....>>>>..>>>>..<<<<....<<<<<<<<.<<..............
.<<<<<...............>>>>><<<<<<.......>>>>>>.....
.......<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<<
....>>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<...<<
..<<<<<<..<<<<.>>>>...>>>>>>..>>...>>>>>>>>..>>>>>
<<<<<<.......>>>>>>........<...........<<<<<<.....
>>>>>>.....>....>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.
>>>>>>.....>.....<<<<<........>>>>>..<<<<<<<<.<<<.
.<......<<<<.<<<<<<..<<<<<..<<<<<<<..<<.<.>.>>...<
<<<<.<<<..........>>>>>>>>.....>>>>>>>...>>>>>..<<
<<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<<..
<<<<<<<.......>>>>>>>....<<...(((>>....>>>>>>>...<
<<<..<<<......>>>..>>>>.<<<....>>>.>>))).......<<<
<<<<.<<..>>>>..>>>>>>>>>.............>>>>..>>>>>>.
......<<<<.<.<<<<<<...<<.......>>...>>>>>>...>>>>.
>.......<<<<<.<.<<<<..<<<<<<<<........>>>>>..>>>.<
<<<<.....>>>>>.....>>>>...>...>>>.>>....<<<<<<<...
.>>>.>>>>....>...>>>>>>>>>>>....<<<<<<<...<.<<..<<
<<<<<...............>>>>>>>.<<<<<...<<<<...<<<<<<<
<<<<))).>>>>>>...>>>>>...>>>>.>>>>>..<.<<.<.<<<<<<
...........>>>>>>..>>>>.>>.>.......>>>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6eri Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.
Resolution3.0 Å
Binding residue
(original residue number in PDB)
R8 K10 K21 K25 R28 R32 Y33 T35 Q36 N41 T42 R49 K50 F51 Y56 H58
Binding residue
(residue number reindexed from 1)
R3 K5 K16 K20 R23 R27 Y28 T30 Q31 N36 T37 R44 K45 F46 Y51 H53
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0009507 chloroplast
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6eri, PDBe:6eri, PDBj:6eri
PDBsum6eri
PubMed29610536
UniProtP28805|RK33_SPIOL Large ribosomal subunit protein bL33c (Gene Name=rpl33)

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