Structure of PDB 9bh5 Chain AZ Binding Site BS01

Receptor Information
>9bh5 Chain AZ (length=71) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKEL
QAKGLVKCVVHHHGQVVYTRA
Ligand information
>9bh5 Chain B2 (length=1476) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugauugauucugucagcgcgauaugcucaaguaaaagauuaagcca
ugcaugcgauucauugaaauugcguacggcucauuagagcagauaucacc
uuauccgggauggauaacugcggaaauacuggagcuaauacaugcacccc
agcggggugcaauuauuaguguugacucugaauaaagcaguuuacuguca
gcugacucuauccggaaagggugucugcccuuucaacuagaugguaguuu
auuggacuaccaugguuguuacggguaacggagaauaaggguucgacucc
ggagagggagccuuagaaacggcuaccacguccaaggaaggcagcaggcg
cgaaacuuauccacuguuguaugagauagugacuaaaaauauaguugaau
acaaaugauucuucgaggagagggcaagucuggugccagcagccgcggua
auuccagcucuccuaguguaucucguuauugcugcgguuaaaaagcucgu
aguuggaucuagguuuaccuugaauaaaucagagugcucaauacaagcgc
uugcuugaauagcaucauggaauaaugaaauuaaugguuaagagggacaa
accgggggcauucguaucauuacgcgagaggugaaauucguggaccguag
ugagacgcccaacagcgaaagcauuugccaagaaugucuucauuaaucaa
gaacgaaagucagagguucgaaggcgauuagauaccgcccuaguucugac
cguaaacgaugccaucucgcgauucggagggugcccugccgaggagcauc
cggaaacgaaagucuuucgguuccggggguaguaugguugcaaagcugaa
acuuaaagaaauugacggaagggcaccacaaggcguggagcuugcggcuu
aauuugacucaacacgggaaaacucacccgguccggacaccaugacugac
agauugaaagcucuuucucgauuuggugguugguggugcauggccguucu
uaguugguggagugauuugucugguuuauuccgauaacgagcgagacucu
agccucuaaauaguuggcgaaucuucggguucguuaacuucuuagaggga
uaagcgguguuuagccgcacgagauugagcgauaacaggucugugaugcc
cuuagauguccggggcugcacgcgugcuacacugguggagucagcggguc
cuaugccgaaagguaucgguaaaccguugaaauucuuccauguccgggau
aggguauuguaauuauugcccuuaaacgaggaaugccuaguaagugugag
ucaucagcucacguugauuacgucccugcccuuuguacacaccgcccguc
gcuauccgggacugaacugauucgagaagaguggggacugugcggaaacc
auuuuuaucgcauugguuugaaccggguaaaagucguaacaagguagcug
uaggugaaccugcagcuggaucaucg
...<<<<<.[.((((>>>>><<.<<<<<<<.....<<..<......<<<.
<<<..<<<<<<......>>>>>>......<<.......<<<<<<<<..<<
<..<<<<<<.<<.....<<.<<<.....>>>.>>......>>...<<<<<
...>>>>><<..<<<<<...<......>..>>>>>....>>.....<<<<
..>>>>....>>>>>>.>>>>>>>>>>><<<....<<<..<<<<<<<<..
.....>>>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>
>.>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>>>.
........<<<....<.....>..>>>..>...>>........<..<<<<
.......>>>>..>..<<<<<((....<.<<<<.....<<..))>>....
...>>>>>>>>>>..>>>>>>>.>>.........<<<((.....<.<<..
.<<<.<<.......<<<<<.<<<.......<..<<.......>>.<<<..
..>>>....>....>>>.>>..>>>............>>....<<<<<<.
..<...<<<<..<<..<<<<<<<<...<<<......>>>......>>>>>
>>>..>>.......<<....>>...>>>>..>..>>>.>>>...>>>...
>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>
..........<<<..<..<<..<<<<<<<<<..>>>>.>>>>>..>>...
<<..))>>...>......>>>.>>>.<<<......<<<<....>>>>...
.>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<<...
....<<........>>..........<<<<<.<....<<<<<.....<<.
<<<........>>>.>>......>>>>>...<<.<<<..<<.<<<<<<..
..<<<.<<<<<....>>>...<<<......>>>...>>.>>>....<<<.
..<<<<<<<..<<<<<<<<<<<<....>>>>>>>>>>>>..>>>>>>>..
...<<<<<.....>>>>>........>>>....>>>.>>>.....>>>>>
>>.....>.>>>>>....>.>>>>.>>>.....<<.<<<<......<<.<
<.<<<<<....>>>>>.>>....>>.......>>>>.>>......<....
<<<<<<..........>>>>>>....>.....>>>>>>....<<<<<<<<
.......>>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
..<<<<<<<....<<<<<<<<.<<<.<<<<<<<<...<<<..>>>...>>
>>>>>>.>>>.>>>>>>>>...>>>>>>>...>.>>...>.....<<<<<
<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9bh5 High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.
Resolution2.63 Å
Binding residue
(original residue number in PDB)
K39 L40 N42 R76 S78 H99 H100
Binding residue
(residue number reindexed from 1)
K2 L3 N5 R39 S41 H62 H63
External links
PDB RCSB:9bh5, PDBe:9bh5, PDBj:9bh5
PDBsum9bh5
PubMed39209556
UniProtP52821|RS25_CAEEL Small ribosomal subunit protein eS25 (Gene Name=rps-25)

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