Structure of PDB 4v8s Chain AY Binding Site BS01

Receptor Information
>4v8s Chain AY (length=376) Species: 523848 (Saccharolobus shibatae B12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DEKDKSYLEEKVKQASNILPQKIVEDLKNLISNKEVLVTRDEIDKIFDLA
IKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTVTLGLPRLIEIVDAKKVPS
TPMMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIILQ
LDNEMLKDKGVTVDDVKKAINRLKLGEFVIDESEGNTLNISFANIDSIAA
LFKLRDKILNTKIKGIKGIKRAIVQKKGDEYIILTDGSNLSGVLSVKGVD
IAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVAD
VMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKG
VVENIIIGHPIKLGTGMVELTMRPIL
Ligand information
Receptor-Ligand Complex Structure
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PDB4v8s Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA.
Resolution4.323 Å
Binding residue
(original residue number in PDB)		R331 E348 V349 K352
Binding residue
(residue number reindexed from 1)		R313 E330 V331 K334
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4v8s, PDBe:4v8s, PDBj:4v8s
PDBsum4v8s
PubMed22848102
UniProtB8YB54|RPO1C_SACSH DNA-directed RNA polymerase subunit Rpo1C (Gene Name=rpo1C)

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