Structure of PDB 8fmw Chain AT Binding Site BS01

Receptor Information
>8fmw Chain AT (length=103) Species: 224326 (Borreliella burgdorferi B31) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MYALVEINGKQYKAIEGEFLKIDKISPVEKDKLEFNSVLLINKDGEVKIG
KPYVVNSLIRCTYKEDKKDKKVVSYRYRRRKSSERKVGHRQTYSYILVDE
IVF
Ligand information
>8fmw Chain AA (length=2929) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggucaaaguaauaagagucuauggugaaugccuaggagcuuuaaggcga
agaaggucgugguaagcugcgaaaagcuugggggagaagcaaacauuuau
ugaucccaagauuaccgaauggaguaauccagcuagcaagaugcuagcua
ucuauuauuuaaauaauagaggcgauaccaggggaagugaaccaucuaag
uacccugaggaaaagaaaucaaagagauucccuuaguaguggcgagcgaa
aagggaguagcccaaacuuuaaaugugucaagcugcagagcguugcauuu
augggguuguaggacguuuaggcuuagucuguaauaagcaaaaaaguuac
aaaauauuuauauagaagaauaaucuggaaaguuuaaccaaagaagguga
uaguccuguaauuuaaauguaaauaucuuuuuaaaauguuccugaguagg
acgaggcacgagaaaccuuguuugaagcuggggagaccacucuccaaggc
uaaauacuagaaagcuaccgauagagaagaguaccgugagggaaagguga
aaagaaccccgggaggggagugaaauagaacugaaaccguagacuuacaa
gcagucaaagccguaauuuauugcggugauggcgugccuuuugcauaaug
aaccugcgaguuaucaugucuagcaagauuaaagcauagaagugcuggag
ucgaagcgaaagcgagucuuaaaagggcgauuuaguuagaugugguagac
ccgaagccgagugaucuauuuauggccaggcugaagcuuggguaaaacca
aguggagggccgaacucuagucuguuuaaaaaggcagggaugagcuguga
auaggagugaaaggcuaaacaaacucggagauagcugguucuccccgaaa
uggauuuaaguucagccuuauuuuaguuuaauagagguagagcacuaauu
gagcuagggccugucaaaggguaccaaacucaguuaaacuccgaaugcua
uuaaaugaugaauaggagugagacuaugggcgauaagguucauagucgag
agggaaacaacccagaccaacagcuaaggucucaaaaauguguuaagugg
aaaaggagguuuagguacguaaacagccaggagguuggcuuagaagcagc
cauaccuuuaaagagugcguaauagcucacuggucgaguacuuaagcgcc
gauaauguaacggggcuaaacacauuaccgaagcuuuggaucuuaacgaa
aguuaagaugguaggggagcguucuguaagccagagaaguuaagcuggaa
aguuugauggagguaucagaagugagaaugcagguaugaguaacgaaaaa
augggugagauucccauucgccgaaaaccuaagguuuccuggguaaaggu
cgucuucccaggguuagucggccccuaaggcaaagcugaaaaguguaguc
gaugggaaacggguuaauauucccguaccucuuauaguuucgauggagug
acgcaugagguuaacuacugcuaggcgaugguuguccuaguuuaagcauu
aaggcgaugaucuuaauaggaaaauccguuaagagagcuaagaugugaug
augagugcuauuuagguagcaugaaauguagguagucaaggugccaagaa
auagcuucuaagguuaggcuauaagggaccguaccgcaaaccgacacagg
uaggugggaugaaaauucuaaggcgcgcgagagaauccacguuaaggaac
ucugcaaaauacguacguaacuucgggauaaguacgaccuaagcaauuag
guagcauaaaaaugguccaaacgacuguuuaccaaaaacacaggucucug
caaaucuguaaagagaaguauagggacugacaccugcccggugcuggaag
guuaagaggagauguuaguuuaugcgaagcauugaauuuaagccccagua
aacggcggccguaacuauaacgguccuaagguagcgaaauuccuugucgg
guaaguuccgacccgcacgaaugguguaacgauuuggacgcugucucaac
guggagcucggugaaauugaaguaucggugaagaugccgauuacuugugg
uuagacggaaagaccccgugaaccuuuacuauagcuugguauugagauuu
gauuaaauauguguaggauaggugggagacuuugaagcuaucucgucagg
gguaguggagucaaucuugaaauaccacccuuguuuaauuagguuucuaa
cuuauagaaauaugaggagagugccagguggguaguuugacuggggcggu
cgccuccuaaagaguaacggaggugcgcaaagguuaccuuagagugguug
gaaaucacucuguaaguguaaaggcauaagguagcuuaacuguaagacug
acaagucgaacagauacgaaaguaggucuuagugaucuggcgguggcaag
uggaagcgccgucacuuaacgaauaaaagguacuccggggauaacaggcu
uauccuucccaagaguucacaucgacggaaggguuuggcaccucgauguc
ggcucaucgcauccuagggcuggagcagguccuaaggguauggcuguucg
ccauuuaaagcgguacgcgagcuggguucagaacgucgugagacaguuug
gucccuaucugccacaagcguuggauauuugagaggagcuaucuuuagua
cgagaggaccgagauggacgaaccucuagugugccaguuauccugccaag
gguaagugcuggguagcuacguucggaaaggauaaccgcugaaagcaucu
aagugggaagccuuccucaagaugagauauccuuuaaggguccuggaaga
auaccagguugauagguuagaaguguaaguauagcaauauauuaagcuga
cuaauacuaauuacccguaucuuuggcca
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....>>>>>>>>...<<.[.(((>>....>>>>>>>...<<<<..<<<<.
...>>>>..>>>>.<<<....>>>.>>)))]......<<<<<<<.<<..)
)))..>>>>>>>>>.............>>>>..>>>>>>.......<<<<
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..........>>>>>>>.<<<<<...<<<<...<<<<<<<<<<<]]]]>>
>>>>...>>>>>...>>>>.>>>>>...<<<....<<<<<..........
.>>>>>....>>>>>>>>.......>>>>>>>.....<<<<<<<<<....
...>>>>>....<<<<<<<<.<<<....<<<<<....>>>>>...>>>..
>>>>>.>>>...>>>>....>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8fmw The structure of a hibernating ribosome in a Lyme disease pathogen.
Resolution2.86 Å
Binding residue
(original residue number in PDB)		N8 D23 K24 K71 R76 R78 R79 R80 K81 R85 K86 V87 G88 H89 R90 Q91
Binding residue
(residue number reindexed from 1)		N8 D23 K24 K71 R76 R78 R79 R80 K81 R85 K86 V87 G88 H89 R90 Q91
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8fmw, PDBe:8fmw, PDBj:8fmw
PDBsum8fmw
PubMed37907464
UniProtO51719|RL21_BORBU Large ribosomal subunit protein bL21 (Gene Name=rplU)

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