Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP

Structure of PDB 6xu7 Chain AQ Binding Site BS01

Receptor Information
>6xu7 Chain AQ (length=148) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQ
YKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQK
YVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR
Ligand information
>6xu7 Chain B2 (length=1936) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auucugguugauccugccaguaguuauaugcuugucucaaagauuaagcc
augcaugucuaaguacacacgaauuaaaagugaaaccgcaaaaggcucau
uauaucaguuaugguuccuuagaucguuaacaguuacuuggauaacugug
guaauucuagagcuaauacaugcaauuaaaacaugaaccuuaugggacgu
gugcuuuuauuaggcuaaaaccaagcgaucgcaagaucguuauauugguu
gaacucuagauaacaugcagaucguauggucuuguaccgacgacagaucu
uucaaaugucugcccuaucaacuuuugaugguaguaucuaggacuaccau
gguugcaacggguaacggggaaucaggguucgauuccggagagggagccu
gagaaacggcuaccacaucuaaggaaggcagcaggcgcguaaauuaccca
cucccagcucggggagguagugacgaaaaauaacaauacaggacucauau
ccgaggcccuguaauuggaaugaguacacuuuaaauccuuuaacaaggac
caauuggagggcaagucuggugccagcagccgcgguaauuccagcuccaa
uagcguauauuaaaguuguugcgguuaaaacguucguaguugaacuugug
cuucauacggguaguauacuauaccuuuauguauguaagcguauuaccgg
uggaguucuuauaugugaucauauguuccuccuauuuaaaaaccugcauu
agugcucuuaaacgaguguuauugugggccgguacuauuacuuugaacaa
auuagagugcuuaaagcaggcuucaaaugccugaauauucugugcauggg
auaaugaaauaagaccucuguucugcuuucauugguuuucagaucaagag
guaaugauuaauagaagcaguuugggggcauuaguauuacgacgcgagag
gugaaauucuuggaccgucguaagacuaacuuaagcgaaagcauuugcca
aagauguuuucauuaaucaagaacgaaaguuagagguucgaaggcgauca
gauaccgcccuaguucuaaccauaaacgaugccagcuagcaauugggugu
agcuacuuuuauggcucucucagucgcuuccgggaaaccaaagcuuuuug
ggcuccgggggaaguaugguugcaaagcugaaacuuaaaggaauugacgg
aagggcaccaccaggaguggagccugcggcuuaauuugacucaacacggg
aaaacuuaccaggucgaacauaaguguguaagacagauugauagcucuuu
cucgaaucuaugggugguggugcauggccguucuuaguucguggagugau
uugucugguuaauuccgauaacgaacgagacucaaauauauuaaauagau
aucuucaggauuauggugcugaagcuuauguagccuucauuauuguguuu
gaauguguuuauguaaguggagccguaccuguugguuugucccauuauaa
ggacacuagcuucuuaaauggacaaauugcgucuagcaauaaugagauug
agcaauaacaggucugugaugcccuuagauguccugggcugcacgcgcgc
uacaaugaaaguaucaacguguauuuccuagaccgagagguccggguaaa
ccgcugaaccacuuucaugcuugggauugugaacugaaacuguucacgau
gaacuuggaauucccaguaagugugagucauuaacucgcauugauuacgu
cccugcccuuuguacacaccgcccgucgcuacuaccgauugaauuauuua
gugaggucuccggacgugaucacugugacgccuugcguguuacgguuguu
ucgcaaaaguugaccgaacuugauuauuuagaggaaguaaaagucguaac
aagguuuccguaggugaaccugcggaaggaucauua
...<<<<..{.(((..>>>><<<<..<<<<<...<.<<.........<<<
.<<<..<<....<<.....<.........>....>>.>>......<<...
.....<<<.<<<..<<....<<<...............<<.....<<.<<
.......>>.>>......>>...........<<<<............>>>
>.<<<.<<<<<.....(((...{...<<<<....>>>>.........<..
.....>..>>>>>.>.>>...<.<<..............>>>.....>>>
...>>>>>.>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>
>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<..
........>>>.>>.<.<<....>>.>...>>>>>>.........<<<..
..<<<.....>>>..>>>......>>.>.....<<<<..<<<..<<....
..>>...>>>..>.>>>........<..............>.........
...<<<<<((......<<<<.....<<..))>>.......>>>>.>>>>>
..>>>>>.>>>>.........<<<[[.....<<<<...<<<.<<.....<
<<<.................................>>>>.....<<<<.
..................................................
.............................>>>>...<<<<<<.<<.....
..<<...<.......>.<<<.........>>>...>>.......>>.>>.
.>>>>..........................}....)))...........
.......>>....<<<<....<<...<<<<..<<..<<<<<<<<.<.<<<
......>>>.....>>>>>>>>>..>>.......<<....>>...>>>>.
..>>..>.>>>...>>>...>>>>....<<<<<<....<...<<<<.<..
...>.>>>>...>.>>>>>>..........<<<.<<.<<<.<<<<<<.<.
.<<<<......>>>>.>.>>>>>>.>>>...<<..]]>>...>>......
>>>.>>>.<<.......<.<<....>>.>.....>>...))).}......
<<.<<<...<<..<<<<<..<<<.<<<<........<<........>>..
........<<<<<..................<<..<<........>>..>
>..............<<.<<<..<<.<<<<<.....<<<.<..<......
>....<<<......>>>....>.>>>....<<<......<<<<...<<..
.<.....<<....<<..........<<<<<<...................
..........>>>>>>.......>>..>>.....>...<<..........
..>>.....>>...>.>>>..............................>
>>.....>>.>>>.....>>>>>>>.......>>>>>......>>>>.>>
>.....<<<<<.........<.....<<<.<<<<....>>>>.>>>....
>..........>>>>>......<....<....<..........>....>.
...>.....>>>>>.....<<<<<<<<.......>>>>>>>>......>>
....>>>.>>..........<..<<.<..<<<<.<<....<<<<.<<<.<
<<..<<<<..<....<<<<.<<<...<<<.........>>>..>..>>..
>>>>....>..>>>>..>>>.>>>.>>>>...>>.>>>>...>.>>...>
......<<<<<<<<....>>>>>>>>..........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6xu7 Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching.
Resolution4.9 Å
Binding residue
(original residue number in PDB)		M1 Q2 R6 F15 R17 K18 K19 T20 T22 Y26 K28 K35 K47 R73 S75 G76 G78 H79 V80 A81 Q82 L122 G124 P126 R127 R128 C129 E130 P131 K132 K133 G138 A139 R140 A141 R142 Y143 Q144 K145 Y147 R148
Binding residue
(residue number reindexed from 1)		M1 Q2 R6 F15 R17 K18 K19 T20 T22 Y26 K28 K35 K47 R73 S75 G76 G78 H79 V80 A81 Q82 L122 G124 P126 R127 R128 C129 E130 P131 K132 K133 G138 A139 R140 A141 R142 Y143 Q144 K145 Y147 R148
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6xu7, PDBe:6xu7, PDBj:6xu7
PDBsum6xu7
PubMed34283226
UniProtQ9W237|RS16_DROME Small ribosomal subunit protein uS9 (Gene Name=RpS16)

[Back to BioLiP]

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417