Structure of PDB 9bh5 Chain AO Binding Site BS01

Receptor Information
>9bh5 Chain AO (length=135) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVKADR
DESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSAL
RALARAGMKIGRIEDVTPIPSDCTRRKGGRRGRRL
Ligand information
>9bh5 Chain B2 (length=1476) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugauugauucugucagcgcgauaugcucaaguaaaagauuaagcca
ugcaugcgauucauugaaauugcguacggcucauuagagcagauaucacc
uuauccgggauggauaacugcggaaauacuggagcuaauacaugcacccc
agcggggugcaauuauuaguguugacucugaauaaagcaguuuacuguca
gcugacucuauccggaaagggugucugcccuuucaacuagaugguaguuu
auuggacuaccaugguuguuacggguaacggagaauaaggguucgacucc
ggagagggagccuuagaaacggcuaccacguccaaggaaggcagcaggcg
cgaaacuuauccacuguuguaugagauagugacuaaaaauauaguugaau
acaaaugauucuucgaggagagggcaagucuggugccagcagccgcggua
auuccagcucuccuaguguaucucguuauugcugcgguuaaaaagcucgu
aguuggaucuagguuuaccuugaauaaaucagagugcucaauacaagcgc
uugcuugaauagcaucauggaauaaugaaauuaaugguuaagagggacaa
accgggggcauucguaucauuacgcgagaggugaaauucguggaccguag
ugagacgcccaacagcgaaagcauuugccaagaaugucuucauuaaucaa
gaacgaaagucagagguucgaaggcgauuagauaccgcccuaguucugac
cguaaacgaugccaucucgcgauucggagggugcccugccgaggagcauc
cggaaacgaaagucuuucgguuccggggguaguaugguugcaaagcugaa
acuuaaagaaauugacggaagggcaccacaaggcguggagcuugcggcuu
aauuugacucaacacgggaaaacucacccgguccggacaccaugacugac
agauugaaagcucuuucucgauuuggugguugguggugcauggccguucu
uaguugguggagugauuugucugguuuauuccgauaacgagcgagacucu
agccucuaaauaguuggcgaaucuucggguucguuaacuucuuagaggga
uaagcgguguuuagccgcacgagauugagcgauaacaggucugugaugcc
cuuagauguccggggcugcacgcgugcuacacugguggagucagcggguc
cuaugccgaaagguaucgguaaaccguugaaauucuuccauguccgggau
aggguauuguaauuauugcccuuaaacgaggaaugccuaguaagugugag
ucaucagcucacguugauuacgucccugcccuuuguacacaccgcccguc
gcuauccgggacugaacugauucgagaagaguggggacugugcggaaacc
auuuuuaucgcauugguuugaaccggguaaaagucguaacaagguagcug
uaggugaaccugcagcuggaucaucg
...<<<<<.[.((((>>>>><<.<<<<<<<.....<<..<......<<<.
<<<..<<<<<<......>>>>>>......<<.......<<<<<<<<..<<
<..<<<<<<.<<.....<<.<<<.....>>>.>>......>>...<<<<<
...>>>>><<..<<<<<...<......>..>>>>>....>>.....<<<<
..>>>>....>>>>>>.>>>>>>>>>>><<<....<<<..<<<<<<<<..
.....>>>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>
>.>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>>>.
........<<<....<.....>..>>>..>...>>........<..<<<<
.......>>>>..>..<<<<<((....<.<<<<.....<<..))>>....
...>>>>>>>>>>..>>>>>>>.>>.........<<<((.....<.<<..
.<<<.<<.......<<<<<.<<<.......<..<<.......>>.<<<..
..>>>....>....>>>.>>..>>>............>>....<<<<<<.
..<...<<<<..<<..<<<<<<<<...<<<......>>>......>>>>>
>>>..>>.......<<....>>...>>>>..>..>>>.>>>...>>>...
>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>
..........<<<..<..<<..<<<<<<<<<..>>>>.>>>>>..>>...
<<..))>>...>......>>>.>>>.<<<......<<<<....>>>>...
.>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<<...
....<<........>>..........<<<<<.<....<<<<<.....<<.
<<<........>>>.>>......>>>>>...<<.<<<..<<.<<<<<<..
..<<<.<<<<<....>>>...<<<......>>>...>>.>>>....<<<.
..<<<<<<<..<<<<<<<<<<<<....>>>>>>>>>>>>..>>>>>>>..
...<<<<<.....>>>>>........>>>....>>>.>>>.....>>>>>
>>.....>.>>>>>....>.>>>>.>>>.....<<.<<<<......<<.<
<.<<<<<....>>>>>.>>....>>.......>>>>.>>......<....
<<<<<<..........>>>>>>....>.....>>>>>>....<<<<<<<<
.......>>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
..<<<<<<<....<<<<<<<<.<<<.<<<<<<<<...<<<..>>>...>>
>>>>>>.>>>.>>>>>>>>...>>>>>>>...>.>>...>.....<<<<<
<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9bh5 High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.
Resolution2.63 Å
Binding residue
(original residue number in PDB)
H33 N39 D40 F42 H44 G50 R51 T53 R56 T58 G60 M61 D66 R67 E69 R99 G103 R105 I136 P137 S138 D139 T141 R142 R143 K144 R147 R148 R150 R151 L152
Binding residue
(residue number reindexed from 1)
H16 N22 D23 F25 H27 G33 R34 T36 R39 T41 G43 M44 D49 R50 E52 R82 G86 R88 I119 P120 S121 D122 T124 R125 R126 K127 R130 R131 R133 R134 L135
External links
PDB RCSB:9bh5, PDBe:9bh5, PDBj:9bh5
PDBsum9bh5
PubMed39209556
UniProtP48150|RS14_CAEEL Small ribosomal subunit protein uS11 (Gene Name=rps-14)

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