Structure of PDB 6yxy Chain AO Binding Site BS01

Receptor Information
>6yxy Chain AO (length=165) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KLPAGKPANKSWFRHNLIIRRKASYRSRWGTGAEGYGTGVPFSDQVKLHC
VDNTNCKHVRLISKATAERFAHCRVFPAVAHRVSVQRFKVSRHRVKPGNI
YWVCLLSRRQTNTRMSGLRTNFDRNTCILMNDQRVPLGTRVMYCAGRHVN
HKYHLKAVVLANFFV
Ligand information
>6yxy Chain AA (length=903) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auuuuaccaauuaagaagaauauuauaauaaugggugucuuauauuuuaa
auaaauauuuaaauuccguguaguaaauuuauuauuuguauuauuuauau
aauagguguauuauauuuaaauuuuaaauuuguuguuuuauauuuagaua
cauauuuauagauuaauauauuuaaauaauauuuuaaaauuuauugaacu
guaauuuuaguuugauguugaaauauuuaauuaaagauguuacaguuguu
cuauauguaccaaauaaauauaguaagauuauuuuaguugaauuaauaaa
uaaauauuuauuuuucuuuguaaauauuaugaacaauuuaaaaauuaauc
uguuuaacuaaaauguuauauauaauaaucuaguauuuuaaugguauauu
uuuaguagguaaaugaaaaguauaaauggauauaacuuaauauuuaauau
uuguuuaaugaaaaguauuuuauuauuauauuguauaguauuauuauagu
guauaguuuuuuaaaaauauaaaaauauuguuaacaacaaauaaaauaaa
guaugaauuaauaucaaaauuuuaauaaaaauuaaaaaauuaaaauaggg
caaguccuacucuccuuuacaaagagaacauuaugauauguaauuguaug
uuugauuggggcaauacuauauuuauuuauauagcauaagaacuauauuc
uuugaaauuauaaaagguucgagcagguuaacaagcauuaaaaauaaaug
uguuucaucgucuacuuauuacuuuuuuuuuuuuuuuuuuguuggguucg
uuguaaagcagauuuguuuauauauuuaauuuuuauaauuaauaauaauu
aauauaaguacgcaaggauugauuauugaaaaaagaaagaagaauauaau
uua
....<<<..............<.<<.........................
.........................................>>.>.....
.......>>>..............<<<<........>>>><<<<......
...........<<....>>.............<<<...<<<<<<<.....
<<<<<.<<<<<<.<<<........>>>.>>>>>>....>>>>>...<<..
.....>>.....>>>>>>..>....>>>......................
..<<<<<<<<..........>>>>>>>>......................
......<<<<.............<<<<.<..>.>>>>.............
..>>>>................................>>>><.......
<.................................................
.................<<<.....<.<<<<..>>>>.>......>>>..
..>......>.......<<<<<......>>>>>....<<<<<<.<<<...
.....<<<.<<<.<<<<..<<.......<<<......>>>........>>
................<<<<<<......>>>>>>................
.............>>>>...>>>.>>>.......<<<<<.......>>>>
>....<<..<...<<<<<.<....................>.>>>>>.>.
.>>...................>>>>>>>>>..................<
<<<..................>>>>.........................
...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6yxy Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		R40 R45 S46 W48 G49 T50 Y55 Q64 K66 R88 F89 H91 C92 H175 Y177
Binding residue
(residue number reindexed from 1)		R21 R26 S27 W29 G30 T31 Y36 Q45 K47 R69 F70 H72 C73 H151 Y153
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 17:08:23 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6yxy', asym_id = 'AO', bs = 'BS01', title = 'Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6yxy', asym_id='AO', bs='BS01', title='Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6yxy', asym_id = 'AO'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6yxy', asym_id='AO')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>