Structure of PDB 4v61 Chain AN Binding Site BS01

Receptor Information
>4v61 Chain AN (length=99) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVTSLSDKWEIHGKLQSPP
RNSAPARLHRRCFLTGRPRANIRDFGLSGHILREMVHTCLLPGATRSSW
Ligand information
>4v61 Chain AA (length=1478) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguucgauccuggcucaggaugaacgcuggcggcaugcuuaacac
augcaagucggacgggaagugguguuuccaguggcggacgggugaguaac
gcguaagaaccugcccuugggaggggaacaacagcuggaaacggcugcua
auaccccguaggcugagaagcaaaaggaggaauccgcccgaggaggggcu
cgcgucugauuagcuaguuggugagguaauagcuuaccaaggcgaugauc
aguagcugguccgagaggaugaucagccacacugggacugagacacggcc
cagacuccuacgggaggcagcaguggggaauuuuccgcaaugggcgaaag
ccugacggagcaaugccgcguggaggcagaaggcccacgggucgugaacu
ucuuuucccggagaagaagcaaugacgguauccggggaauaagcaucggc
uaacucugugccagcagccgcgguaagacagaggaugcaagcguuauccg
gaaugauugggcguaaagcgucuguagguggcuuuuuaaguccgccguca
aaucccagggcucaacccuggacaggcgguggaaacuaccaagcuggagu
acgguaggggcagagggaauuuccgguggagcggugaaaugcguagagau
cggaaagaacaccaacggcgaaagcacucugcugggccgacacugacacu
gagagacgaaagcuaggggagcgaaugggauuagauaccccaguaguccu
agccguaaacgauggauacuaggcgcugugcguaucgacccgugcagugu
uguagcuaacgcguuaaguaucccgccuggggaguacguucgcaagaaug
aaacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguu
uaauucgaugcaaagcgaagaaccuuaccagggcuugacaugccgcgaau
ccucuugaaagagaggggugccuucgggaacgcggacacagguggugcau
ggcugucgucagcucgugccguaagguguuggguuaagucccgcaacgag
cgcaacccucguguuuaguugccaacguugaguuuggaacccugaacaga
cugccggugauaagccggaggaaggugaggaugacgucaagucaucaugc
cccuuaugcccugggcgacacacgugcuacaauggccgggacaaaggguc
gcgaucccgcgagggugagcuaaccccaaaaacccguccucaguucggau
ugcaggcugcaacucgccugcaugaagccggaaucgcuaguaaucgccgg
ucagcaauacggcggugaauucguucccgggccuuguacacaccgcccgu
cacacuaugggagcuggccaugcccgaagucguuaccuuaaccgcaagga
gggggaugccgaaggcagggcuagugacuggagugaagucguaacaaggu
agccguacuggaaggugcggcuggauca
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<<
.<<<..<<<..<<.<<..<......>>>..>>>>>......<<.......
<<<<.<<..<<<..<<<<<<<.<<<<.....<<<<<......>>>>>...
...>>>>....<<<....>>>....<<<....>>>.>>>>>>>.>>>.>>
.>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>......>
>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<.........>>>
>>>.<<<<....>>>>...>>>>>>.........<<<....<<<<....>
>>>..>>>..>>.>>>>>>..<<<<.......<<<....>>>......>>
>>.....<<<<<..................>>>>>.......<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<<((.....<<<<...<<<.<<<<..<.<<<<<<<<<<..
....<<<<<<.....>>>>>>....>>>>>>>>..>>>..>>>>...<<<
.<<<<...<<<<<<<....<<<<<<<<...<<<......>>>......>>
>>>>>.>..........<<....>>.>>>>>>>..>>>>..>>>...>>>
...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>
>>>..........<<<<<<..<....<<<<.<......>.>>>>.....>
....<<..))>>.....>>>>>>.>>>.<<<......<<<<....>>>>.
...>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<.
.....<<........>>..........<<<<<<<......<<<<<<<..<
<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<<<...<<............>>....>>>>>>>..
...<<<<<.....>>>>>........>>>>.........>>>...>>>>>
>>>>...>>>>>>>...>>.>>>>>>>>.....<<.<<<<.....<<<..
<<...<<<....>>>...>>....>>>.....>>>>.>>......<....
<<<<<<<........>>>>>>>....>.....>>>>>>....<<<<<<<.
.........>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.
<.<<<<.<<<..<<<<<<<.<<<<....<.<<<<.<<<<..<<....>>.
>>>>>>>>.>...>>>>.>>>>>>>..>>>.>>>>..>.>>...>.....
<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v61 Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins
Resolution9.4 Å
Binding residue
(original residue number in PDB)		A2 R3 S5 L6 Q8 R9 E10 K12 R13 R24 R32 V34 P51 R52 A57 R58 H60 R61 T66 R68 P69 R70 N72 I73 R74 H81 R97 S99 W100
Binding residue
(residue number reindexed from 1)		A1 R2 S4 L5 Q7 R8 E9 K11 R12 R23 R31 V33 P50 R51 A56 R57 H59 R60 T65 R67 P68 R69 N71 I72 R73 H80 R96 S98 W99
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0009507 chloroplast
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v61, PDBe:4v61, PDBj:4v61
PDBsum4v61
PubMed18042701
UniProtP06507|RR14_SPIOL Small ribosomal subunit protein uS14c (Gene Name=rps14)

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