Structure of PDB 6xu6 Chain AM Binding Site BS01

Receptor Information
>6xu6 Chain AM (length=119) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
INTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKK
LVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKD
FGEETPALDVVKDHLRQNS
Ligand information
>6xu6 Chain B2 (length=1936) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auucugguugauccugccaguaguuauaugcuugucucaaagauuaagcc
augcaugucuaaguacacacgaauuaaaagugaaaccgcaaaaggcucau
uauaucaguuaugguuccuuagaucguuaacaguuacuuggauaacugug
guaauucuagagcuaauacaugcaauuaaaacaugaaccuuaugggacgu
gugcuuuuauuaggcuaaaaccaagcgaucgcaagaucguuauauugguu
gaacucuagauaacaugcagaucguauggucuuguaccgacgacagaucu
uucaaaugucugcccuaucaacuuuugaugguaguaucuaggacuaccau
gguugcaacggguaacggggaaucaggguucgauuccggagagggagccu
gagaaacggcuaccacaucuaaggaaggcagcaggcgcguaaauuaccca
cucccagcucggggagguagugacgaaaaauaacaauacaggacucauau
ccgaggcccuguaauuggaaugaguacacuuuaaauccuuuaacaaggac
caauuggagggcaagucuggugccagcagccgcgguaauuccagcuccaa
uagcguauauuaaaguuguugcgguuaaaacguucguaguugaacuugug
cuucauacggguaguauacuauaccuuuauguauguaagcguauuaccgg
uggaguucuuauaugugaucauauguuccuccuauuuaaaaaccugcauu
agugcucuuaaacgaguguuauugugggccgguacuauuacuuugaacaa
auuagagugcuuaaagcaggcuucaaaugccugaauauucugugcauggg
auaaugaaauaagaccucuguucugcuuucauugguuuucagaucaagag
guaaugauuaauagaagcaguuugggggcauuaguauuacgacgcgagag
gugaaauucuuggaccgucguaagacuaacuuaagcgaaagcauuugcca
aagauguuuucauuaaucaagaacgaaaguuagagguucgaaggcgauca
gauaccgcccuaguucuaaccauaaacgaugccagcuagcaauugggugu
agcuacuuuuauggcucucucagucgcuuccgggaaaccaaagcuuuuug
ggcuccgggggaaguaugguugcaaagcugaaacuuaaaggaauugacgg
aagggcaccaccaggaguggagccugcggcuuaauuugacucaacacggg
aaaacuuaccaggucgaacauaaguguguaagacagauugauagcucuuu
cucgaaucuaugggugguggugcauggccguucuuaguucguggagugau
uugucugguuaauuccgauaacgaacgagacucaaauauauuaaauagau
aucuucaggauuauggugcugaagcuuauguagccuucauuauuguguuu
gaauguguuuauguaaguggagccguaccuguugguuugucccauuauaa
ggacacuagcuucuuaaauggacaaauugcgucuagcaauaaugagauug
agcaauaacaggucugugaugcccuuagauguccugggcugcacgcgcgc
uacaaugaaaguaucaacguguauuuccuagaccgagagguccggguaaa
ccgcugaaccacuuucaugcuugggauugugaacugaaacuguucacgau
gaacuuggaauucccaguaagugugagucauuaacucgcauugauuacgu
cccugcccuuuguacacaccgcccgucgcuacuaccgauugaauuauuua
gugaggucuccggacgugaucacugugacgccuugcguguuacgguuguu
ucgcaaaaguugaccgaacuugauuauuuagaggaaguaaaagucguaac
aagguuuccguaggugaaccugcggaaggaucauua
...<<<<<.{.((((>>>>><<<<.<<<<<<...<.<<..<......<<<
.<<<..<<....<<....................>>.>>......<<...
.....<<<.<<<..<<....<<<...............<<.....<<.<<
.......>>.>>......>>...........<<<<............>>>
>.<<<.<<<<<......((...{...<<<<....>>>>............
........>>>>>.>.>>...<.<<.............>.>>.....>>>
...>>>>>.>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>
>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<..
........>>>.>>.<.<<....>>.>...>>>>>>.........<<<..
..<<<.....>>>..>>>..>...>>.>.....<<<...<<<..<<....
..>>...>>>....>>>.................................
...<<<<<((......<<<<.....<<..))>>.......>>>>.>>>>>
..>>>>>>>>>>.........<<<[[.....<<<<...<<<.<<.....<
<<<.................................>>>>....<<<<<.
..<...........................>...........<.......
..........................>..>>>>>..<<<<<<.<<.....
..<<...<.......>..<...........>....>>.......>>.>>.
.>>>>..........................}....))............
.......>>....<<<<<.<.<<...<<<<..<<..<<<<<<<<.<.<<<
......>>>.....>>>>>>>>>..>>.......<<....>>...>>>>.
..>>>>>.>>>...>>>...>>>>....<<<<<<<...<...<<<<.<..
...>.>>>>...>>>>>>>>..........<<<.<<.<<<.<<<<<<.<.
.<<<<......>>>>.>.>>>>>>.>>>...<<..]]>>...>>......
>>>.>>>.<<<......<<<<....>>>>....>>>..)))).}......
<<.<<<...<<..<<<<<..<<<.<<<<........<<........>>..
........<<<<<..................<<..<<........>>..>
>............<.<<.<<<..<<.<<<<<<....<<<...<<......
>>...<<<......>>>......>>>....<<<.......<<....<<..
.......<<....<<..........<<<<<<...................
..........>>>>>>.......>>..>>.........<<..........
..>>.....>>....>>................................>
>>....>>>.>>>.....>>>>>>>>......>>>>>......>>>>.>>
>.....<<<<<.........<.....<<..<<<<....>>>>..>>....
>..........>>>>>...........<....<..........>....>.
.........>>>>>.....<<<<<<<<.......>>>>>>>>......>>
....>>>.>>..........<..<<.<..<<<<.<<....<<<<.<<<.<
<<..<<<<..<....<<<<.<<<...<<<.........>>>..>..>>..
>>>>....>..>>>>..>>>.>>>.>>>>...>>.>>>>...>.>>...>
.....<<<<<<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6xu6 Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching.
Resolution3.5 Å
Binding residue
(original residue number in PDB)
H40 G41 I42 H43 Q44 K47 F63 D64 E65 R108 K109 V110 C111 G112 C113
Binding residue
(residue number reindexed from 1)
H20 G21 I22 H23 Q24 K27 F43 D44 E45 R88 K89 V90 C91 G92 C93
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:6xu6, PDBe:6xu6, PDBj:6xu6
PDBsum6xu6
PubMed34283226
UniProtP80455|RS12_DROME Small ribosomal subunit protein eS12 (Gene Name=RpS12)

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