Structure of PDB 9bdn Chain AL38 Binding Site BS01 |
|
>9bdn Chain A28S (length=3557)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
cgcgaccucagaucagacguggcgacccgcugaauuuaagcauauuaguc agcggaggaaaagaaacuaaccaggauucccucaguaacggcgagugaac agggaagagcccagcgccgaauccccgccccgcggcggggcgcgggaaau guggcguacggaagacccacuccccggcgcgggggcccaaguccuucuga ucgaggcccagcccguggacggugugaggccgguagcggcccccggcgcg ccgggcccgggucuucccggagucggguugcuugggaaugcagcccaaag cgggugguaaacuccaucuaaggcuaaauaccggcacgagaccgauaguc aacaaguaccguaagggaaaguugaaaagaacuuugaagagagaguucaa gagggcgugaaaccguuaagagguaaacgggugggguccgcgcaguccgc ccggaggauucaacccggcggcgcgguccggccgugccggcggggcggau ccccgcucucggcgggggaccgccccccggccggcgaccggccgccgccg ggcgcauuuccaccgcggcggugcgccgcgaccggcuccgggacggcugg gaaggccccggcggggaagguggcccgggggccccggguguuacagcccc gccccggcagcagcagcucgccgaaucccggggccgagggagcgagaccc gugcgccgcgcucuccccccggggggccgggccaccccucccacggcgcg accgcuggggcggacuguccagugcgccccgggcgggucgcgccgucggg cccggggggccacgcguccagcgcacggggucggcggcgaugucggcuac ccacccgacccgucuugaaacacggaccaaggagucuaacacgugcgcga gucgggggcuacgaaagccgccguggcgcaaugaaggugaaggccggccg gccgaggugggaucccgaggccuuccaguccgccgagggcgcaccaccgg cccgucucgcccgccgcgccggggagguggagcacgagcgcacguguuag gacccgaaagauggugaacuaugccugggcagggcgaagccagaggaaac ucugguggagguccguagcgguccugacgugcgaaucggucguccgaccu ggguauaggggcgaaagacuaaucgaaccaucuaguagcugguucccucc aaaguuucccucaggauagcuggcgcucuccgcaguuuuauccgguaaag cgaaugauuagaggucuuggggccgaaacgaucucaaccuauucucaaac uuuaaauggguaagaagcccggcucgcugguguggagccgggcguggaau gcgagugccuagugggccacuuuugguaagcagaacuggcgcugcgggau gaaccgaacgccggguuaaggcgcccgaugccgacgcucaucagacccca gaaaagguguugguugauauagacagcaggaugguggccauggaagucgg aauccgcuaaggaguguguaacaacucaccugccgaaucaacuagcccug aaaauggauggcgcuggagcgucgggcccauacccggccgucgcuggcag ucggcagagcgagaaagagagggacgcuacgccgcgacgaguaggagggc cgcugcggugagccuugaagccuagggcgcgggcccggguggagccgccg caggugcagaucuuggugguaguagcaaauauucaaacgagaacuuugaa ggccgaaguggagaaggguuccaugugaacagcaguugaacaugggucag ucgguccugagagaugggcgagcgccguuccgaagggacgggcgauggcc uccguugcccucagccgaucgaaagggagucggguucagauccccgaauc cggaguggcggagaugggcgccgcgaggcguccagugcgguaacgcgacc gaucccggagaagccggcgggagccccggggagaguucucuuuucuuugu gaagggcagggcgcccuggaauggguucgccccgagagaggggcccgugc cuuggaaagcgucgcgguuccggcggcguccggugagcucucgcuggccc uugaaaauccgggggagaggguguaaaucucgcgccgggccguacccaua uccgcagcaggucuccaaggugaacagccucuggcauguuggaacaaugu agguaagggaagucggcaagccggauccguaacuucgggauaaggauugg cucuaagggcucagccgacuuagaacuggugcggaccaggggaauccgac uguuuaauuaaaacaaagcaucgcgaaggcccgcggcggguguugacgcg augugauuucugcccagugcucugaaugucaaagugaagaaauucaauga agcgcggguaaacggcgggaguaacuaugacucucuuaagguagccaaau gccucgucaucuaauuagugacgcgcaugaauggaugaacgagauuccca cugucccuaccuacuauccagcgaaaccacagccaagggaacgggcuugg cggaaucagcggggaaagaagacccuguugagcuugacucuagucuggca cggugaagagacaugagagguguagaauaagugggaggccggccgccggu gaaauaccacuacucugaucguuuuuucacugacccggugaggcgggggg gcgagggcucucgcuucuggcgccaagcgcccggcgccgggcgcgacccg cuccggggacagugccagguggggaguuugacuggggcgguacaccuguc aaacgguaacgcagguguccuaaggcgagcucagggaggacagaaaccuc ccguggagcagaagggcaaaagcucgcuugaucuugauuuucaguacgaa uacagaccgugaaagcggggccucacgauccuucugaccuuuuggguuuu aagcaggaggugucagaaaaguuaccacagggauaacuggcuuguggcgg ccaagcguucauagcgacgucgcuuuuugauccuucgaugucggcucuuc cuaucauugugaagcagaauucaccaagcguuggauuguucacccacuaa uagggaacgugagcuggguuuagaccgucgugagacagguuaguuuuacc cuacugaugauguguuguugccaugguaauccugcucaguacgagaggaa ccgcagguucagacauuugguguaugugcuuggcugaggagccaaugggg cgaagcuaccaucugugggauuaugacugaacgccucuaagucagaaucc cgcccaggcggaacgauagccggagccucgguuggccucggauagccggu cccccggggguccggugcggagagcccuucgucccgggaaacggggcggc cggaaagggggccgcccucucgcccgucacgcaccgcacguucgugggga accuggcgcuaaaccauucguagacgaccugcuucugggucgggguuucg uacguagcagagcaggcugcgaucuauugaaagucagcccucgacacaag gguuugu |
.........................<<<<<<.....<......>...... >>>>>.>.........<<....>>..<<<<<<.....<<.....>>.... >>>>>>..<<<..<.<<<...<<<<<<<<<<.....>>>>>>.>>>>... ..>>>.>..<<<<<<<<<....<<<<<<<.<<<<<<<<....<<<<.... ..>>>>.....((......<<<.....))>>>...>.>>>>>>>....>> >>>>>...>>>>>>>>>.......<<<<<<<........>>>>>>>.... .<<<<<..((((((>>>>>..>>>.......................... ........<<....>>...............<<<<....>>>>....... ...........................<<<<<<<<..<<<.<....<<<< <<<<.<<<.....<<<<<<<<<<....<<<<<<<.<<<<<.<<<<<<<.< <<<<<<.....>>>>>.>>>>>>>>>>>>>>>>>>...>>>.>>>>>>>> >>......>>>.>>>.>>>>>...<<<<<<<<<<<<<<<<<<.<<<<... <<..<<<..<<<<<<<......<<<<<<<...>>>>>>>.......>>>> >>>..>>>.........>>>>>>...>>>>>>>>>>.....<<....... >>.........<...<<<<...>>>>...<.<...<<<.<<<<<<<<<<< <<<<<<<<<<<<.<<<<..>>>>.>>>>>>.>>>>.>>>>>>>>>>.>>> ...>>>.>.>..........>........>>>.>>>>>....>>>>...> >>>>>>>..<<<<........>>>><<<<<<....<<<<<<<<<<<<<.. <<<...<<<<.....>>>>.....>>>...<<....>>...<<<<<..>> >>>..<<<<<...<<<..<<<.......[[.>>>..>>>....>>>>>.< <<<<<<<<.<<<<......>>>>>>>>>>>.>>....>>>>>>>>>>>>> ..<<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<<<<<....> >>>>>>.....>>>...<<<..<<.<<........>>>>.>>>....>>> >>>>>>...<<.......>>......>>>>>>...>..>.>>..<<<<<< ....<.<<<....>>>.><<.<<<<<<<...<<<.<<<<<<<<<...<<< ....<<<....<<<..<<<<.............>>>>>>>....>>>..> >.>...>>>>>>>...<<<<<<<<<.........>>>>>>>>>....>>> >>>>>>>>>..>>..<<<<.<<<<<.....>>>>>.>>>>....<<<... ...>>>...<<<<<<<...<<<(((.......<<<<<.....<<...... ....<<<.<<<<<<<<<........<<<<<.................... ...............<<......>>...>>>>>....>>>>>>>>>>>>. .........))).>>...>>>>>..>>>...>>>>>>><<<<<<.<<<.. ..................]]..........>>>>>>>>>....>>>>>>. <.<<<<<<<<.<<......<<<<.<<<<....>>>>>>>>...>>>>>>> >>>..>.....>>>>>><<.....<<.....<<<<<<.......>>>>>> .<<<.....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>....( (<<<<<<...<<....<<<....>>>..........<<.<<<<<<<<<.. .>>>>>>>>>>>......>>....>>>..<<<<<........>>>>>))< <<<....<<<<<..<<<<<<<<....>>>>>>>>..<<<....>>>...< ..<<<<<<<...<<<<<<<<<<<<.<<<<<<<<<<..[[[..>>>>>>.. ..<<<<<.<<<<.<<<<.....<<<.....>>>.....>>>>>>>>..>> >>>.....<<<<<<<.......>>>>>>>>>>>...>>>>>>>>>>>>.. .......>>>>>>>..>..........>>.>>>.>>>>.>>>..>>.... .<<......>>>>>>>.<<<<.....>>>>..>>>....<<<<.....<< <<<<<.<<.........<.....<<<<<.....<..>......>>>>><< .<<<<<<<<<<.>>>>..>>>>>>.>>............<<<<<<<<<.. <<<.........>>>..<<<<<<<....<<<<.....>>>>......>>> >>>>...<<..<<<..<<<<<<....<<<.....<<<<....>>>>.... .>>>.>>>>..>>>>><<<<<<.......>>>>>>........<...... .....<<<<<.......>>>>>.....>.....>>....>>.>>>>>>>. .>..>>.>>>>>>>..>>>>>>....>>....<<<<<........>>>>> ....<<<<<..<<<.<<......<<<<.<<<<<<..<<<<<.<<<<<<<< <.<<<<<<<<<<<<.<<<<...........<......<<..>>....... .........>..>>>>.>>.>>>>>>>>>>...<<<<<.....<<<<..< <.........>>..............<<<<<<<<..>>>>>>>>..>>>> ..>>>>>....>>>>>>>>>..>>>>>...<<<.....>>>..<<<<<<. ..........>>>>>>..<<...<<<<<<<...<<<<<<.......>>>> >>.....<<.[.(((>>....>>>>>>>...<<<..<<<<.......>>> >..>>>.<<<....>>>.>>)))].....<<<<<<<..<<<..)))))). >>>>>>>>>>.........>>>>..>>>>>>.......<<.<.<.<<<<< <...<<.......>>...>>>>>>...>>.>.>.......<<<<<.<<<< <<..<.<.<<<<<......>>>>>...>.>.<<<.........>>>.... .>>>>>..>...>>>.>>....<<<<<<<....>>>.>>>>....>>..> >>.>>>>>.....<<<<<<.<..<<<....<<<<<............... ..>>>>>..<<<<....<<<<....<<.<<<<<<.]]]..>>>>..>>.> >...>>>>...>>>><<<<<...<<<<<...........>>>>>...>>> >>.>>>...>.>>>>>>.<<<<<..<<<<....<<<........<<<<<. .<<<<.>>>>.>>>>>.......>>>...<<<..<<<<.......<<<<< <........>>>>>.>......>>>>..>>>..............>>>>. .>.>>>>...<<<<<....................<<.<<<<<<<.<<.. ...<<<<.<..<<<<.>>>>..>>>>>....>>....>>>>.>>>.>>.. >>>>>.. |
|
|
|
|