Structure of PDB 6xu7 Chain AL Binding Site BS01

Receptor Information
>6xu7 Chain AL (length=155) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDG
TYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFE
KRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVSKGQGAKK
SFKKY
Ligand information
>6xu7 Chain B2 (length=1936) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auucugguugauccugccaguaguuauaugcuugucucaaagauuaagcc
augcaugucuaaguacacacgaauuaaaagugaaaccgcaaaaggcucau
uauaucaguuaugguuccuuagaucguuaacaguuacuuggauaacugug
guaauucuagagcuaauacaugcaauuaaaacaugaaccuuaugggacgu
gugcuuuuauuaggcuaaaaccaagcgaucgcaagaucguuauauugguu
gaacucuagauaacaugcagaucguauggucuuguaccgacgacagaucu
uucaaaugucugcccuaucaacuuuugaugguaguaucuaggacuaccau
gguugcaacggguaacggggaaucaggguucgauuccggagagggagccu
gagaaacggcuaccacaucuaaggaaggcagcaggcgcguaaauuaccca
cucccagcucggggagguagugacgaaaaauaacaauacaggacucauau
ccgaggcccuguaauuggaaugaguacacuuuaaauccuuuaacaaggac
caauuggagggcaagucuggugccagcagccgcgguaauuccagcuccaa
uagcguauauuaaaguuguugcgguuaaaacguucguaguugaacuugug
cuucauacggguaguauacuauaccuuuauguauguaagcguauuaccgg
uggaguucuuauaugugaucauauguuccuccuauuuaaaaaccugcauu
agugcucuuaaacgaguguuauugugggccgguacuauuacuuugaacaa
auuagagugcuuaaagcaggcuucaaaugccugaauauucugugcauggg
auaaugaaauaagaccucuguucugcuuucauugguuuucagaucaagag
guaaugauuaauagaagcaguuugggggcauuaguauuacgacgcgagag
gugaaauucuuggaccgucguaagacuaacuuaagcgaaagcauuugcca
aagauguuuucauuaaucaagaacgaaaguuagagguucgaaggcgauca
gauaccgcccuaguucuaaccauaaacgaugccagcuagcaauugggugu
agcuacuuuuauggcucucucagucgcuuccgggaaaccaaagcuuuuug
ggcuccgggggaaguaugguugcaaagcugaaacuuaaaggaauugacgg
aagggcaccaccaggaguggagccugcggcuuaauuugacucaacacggg
aaaacuuaccaggucgaacauaaguguguaagacagauugauagcucuuu
cucgaaucuaugggugguggugcauggccguucuuaguucguggagugau
uugucugguuaauuccgauaacgaacgagacucaaauauauuaaauagau
aucuucaggauuauggugcugaagcuuauguagccuucauuauuguguuu
gaauguguuuauguaaguggagccguaccuguugguuugucccauuauaa
ggacacuagcuucuuaaauggacaaauugcgucuagcaauaaugagauug
agcaauaacaggucugugaugcccuuagauguccugggcugcacgcgcgc
uacaaugaaaguaucaacguguauuuccuagaccgagagguccggguaaa
ccgcugaaccacuuucaugcuugggauugugaacugaaacuguucacgau
gaacuuggaauucccaguaagugugagucauuaacucgcauugauuacgu
cccugcccuuuguacacaccgcccgucgcuacuaccgauugaauuauuua
gugaggucuccggacgugaucacugugacgccuugcguguuacgguuguu
ucgcaaaaguugaccgaacuugauuauuuagaggaaguaaaagucguaac
aagguuuccguaggugaaccugcggaaggaucauua
...<<<<..{.(((..>>>><<<<..<<<<<...<.<<.........<<<
.<<<..<<....<<.....<.........>....>>.>>......<<...
.....<<<.<<<..<<....<<<...............<<.....<<.<<
.......>>.>>......>>...........<<<<............>>>
>.<<<.<<<<<.....(((...{...<<<<....>>>>.........<..
.....>..>>>>>.>.>>...<.<<..............>>>.....>>>
...>>>>>.>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>
>>>......>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<..
........>>>.>>.<.<<....>>.>...>>>>>>.........<<<..
..<<<.....>>>..>>>......>>.>.....<<<<..<<<..<<....
..>>...>>>..>.>>>........<..............>.........
...<<<<<((......<<<<.....<<..))>>.......>>>>.>>>>>
..>>>>>.>>>>.........<<<[[.....<<<<...<<<.<<.....<
<<<.................................>>>>.....<<<<.
..................................................
.............................>>>>...<<<<<<.<<.....
..<<...<.......>.<<<.........>>>...>>.......>>.>>.
.>>>>..........................}....)))...........
.......>>....<<<<....<<...<<<<..<<..<<<<<<<<.<.<<<
......>>>.....>>>>>>>>>..>>.......<<....>>...>>>>.
..>>..>.>>>...>>>...>>>>....<<<<<<....<...<<<<.<..
...>.>>>>...>.>>>>>>..........<<<.<<.<<<.<<<<<<.<.
.<<<<......>>>>.>.>>>>>>.>>>...<<..]]>>...>>......
>>>.>>>.<<.......<.<<....>>.>.....>>...))).}......
<<.<<<...<<..<<<<<..<<<.<<<<........<<........>>..
........<<<<<..................<<..<<........>>..>
>..............<<.<<<..<<.<<<<<.....<<<.<..<......
>....<<<......>>>....>.>>>....<<<......<<<<...<<..
.<.....<<....<<..........<<<<<<...................
..........>>>>>>.......>>..>>.....>...<<..........
..>>.....>>...>.>>>..............................>
>>.....>>.>>>.....>>>>>>>.......>>>>>......>>>>.>>
>.....<<<<<.........<.....<<<.<<<<....>>>>.>>>....
>..........>>>>>......<....<....<..........>....>.
...>.....>>>>>.....<<<<<<<<.......>>>>>>>>......>>
....>>>.>>..........<..<<.<..<<<<.<<....<<<<.<<<.<
<<..<<<<..<....<<<<.<<<...<<<.........>>>..>..>>..
>>>>....>..>>>>..>>>.>>>.>>>>...>>.>>>>...>.>>...>
......<<<<<<<<....>>>>>>>>..........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6xu7 Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching.
Resolution4.9 Å
Binding residue
(original residue number in PDB)
E6 Q10 F13 G14 N16 N18 K22 P23 K29 R33 R35 V37 G38 L39 R45 K55 K56 D62 R64 R66 R68 K76 K78 M79 Q80 T82 V84 R87 R94 K95 K101 R102 H103 R104 N105 M106 R129 P130 L131 S132 K133 T134 R136 F137 K144
Binding residue
(residue number reindexed from 1)
E6 Q10 F13 G14 N16 N18 K22 P23 K29 R33 R35 V37 G38 L39 R45 K55 K56 D62 R64 R66 R68 K76 K78 M79 Q80 T82 V84 R87 R94 K95 K101 R102 H103 R104 N105 M106 R129 P130 L131 S132 K133 T134 R136 F137 K144
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0000228 nuclear chromosome
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6xu7, PDBe:6xu7, PDBj:6xu7
PDBsum6xu7
PubMed34283226
UniProtQ0E9B6|RS11_DROME Small ribosomal subunit protein uS17 (Gene Name=RpS11)

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