Structure of PDB 6xyw Chain AK Binding Site BS01

Receptor Information
>6xyw Chain AK (length=87) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EMGAWKPLGISARRRAMLRKEVLTNGEDWPYDPERKAMRTKRKGHKCDRI
SAEKRENTAKLMLKMPQMLLDYKKRRWEKKMKEEEKA
Ligand information
>6xyw Chain 1 (length=2842) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gaaugcauuggauggaugcccgggcauugagaaggaaggacgcuuucaga
ggcgaaaggccauggggagauaccgucugugauccauggaucuccgaucg
ggaaaccguauccaagcuccguggcuagucugcgcucuuuggacuuugaa
aacuuagcgaacugaaacaucuaaguagcuaaaggaagggaaaucaaccg
agaccccguuaguagcggcgagcgagagcggauuugggauuuuaagaaaa
agaaagacgaagcacuucuuuuucgccagguuuacuguaauugugaaaag
guuggaagaucuggccaaagaaggugauagccccguagauucguuccuau
gguucgauccuucccaguaaaacgcggcguguucgaauucugaucgcuuu
uacgcgagaaagggggaccacccucuaagccuaaguauuccucaaugacc
gauagcguacaaguaccgugagggaaaggugaaaagaacccuaugacggg
agugcaauagagaaccugagauccgaugcgaacaaucagucgaaggagua
gucaagcgcacucacucuaacggcguaccuuuugcaugaugggucagcga
ggaaaugggaagagcggcuuaagccauuagguguaggcgcuuuccaaagg
uggaaucuucuaguucuuccuauuugacccgaaaccgaucgaucuagcca
ugagcagguugaagagagcucuaacaggccuuggaggaccgaacccacgu
auguggcaaaauacggggaugacuuguggcuaggggugaaaggccaacca
agaucggauauagcugguuuuccgcgaaaucuauuucaguagagcguaug
augucgauggcccgagguagagcacucaaugggcuaggguggcuuaccaa
ccccagggaaacuccgaauacaggccguucucguuuguacagacagacuu
uuggggugcuaagauccaaagucgagagggaaacagcccagaucguacgc
uaaggucccuaagcaaucacuuaguggaaaaggaagugaucgagcgauga
caaccaggaggugggcuuggaagcagccauccuuugaagaaagcguaaua
gcucacuggucuagcuccauggcaccgaaaauguaucagggcucaaguga
uucaccgaagcgacgagaccuugaaagcugcuuuuucaagugucaguagc
ggaacguucugucaaucggggaagguuuuuggugacaagaccuggagaua
ucagaagugagaaugcugacaugaguaacgauaaauccugugaaaaacac
gaucgccugccaguggaaggcuuucugcguucagucaaucuacgcagagu
gaaucggucccuaaggaacccccgaaagggcugccguccgauggguacac
gaaagugacgaaguugcuuugacuacaaaaccaugccucucucuuggagc
gaauuggaugaucgggccgagggcagcguagcgccucuuccccucacucu
ccuuucuccaauaugaaccuugagucaucaaaggcgagucuguuuauagu
cgcgacucuugucauagucaagaagguugaaacuuccaggaaaaaacuuc
gaauugggagggcgauccucccggugaacugaccguaccccaaaccgaca
caggugaacaaguagaguauacuagggcgcuugagagaaccaugucgaag
gaacucggcaaaaugaccccguaacuucgggagaaggggugcucuccuau
cuuuugauuaggaaagcggcacauaccaggggguagcgacuguuuauuaa
aaacacaggacucugcuaagugguaacacgauguauagagucugacaccu
gcccggugcuggaaagucaaaaggagaaguguuauaagcuuugaauggaa
gccccgguaaacggcggcaguaacucuaacuguccuaagguagcgaaauu
ccuugucgcauaaguagcgaccugcacgaaugguguaacgacugccccgc
ugucuccgacauggacccggugaaauugaauucuccgugaagaugcggag
uaccaacggcuagacgguaagaccccgugcaccuucacuauagcuucgca
gugacaaccuugaucgaauguguaggauaggugggaggucgugacauaga
aggaccaauccugaaagaccacucuuucgucuaagggugccuaaccgccg
cggcgggacacugcgagguggguaguuuaucuggggcggaugccuccuaa
agaguaacggaggugugcgaagguaggcucaagcuaagauucugcucgug
agcguaaugguauaagccugccugacugugagaccgacuggucgaacaga
gacgaaagucggccauagugauccgggagucccguguggaagggcucucg
cucaacggaucaaagguacgccggggauaacaggcugaugacucccaaga
gcucuuaucgacggagucguuuggcaccucgaugucgacucaucacaucc
ugggguugaagaaggucccaaggguucgguuguucgccgauucaaguggu
acgugaguuggguuuagaacgucgugagacaguucgguuccuaucuaccg
uugguguuaaagggagaacugcgaggagccaacccuaguacgagaggacu
ggguugggccaaccuaugguguaccgguuguuaugccaauagcagcgccg
ggcagcuaaguugguauggaagaacugcugcuuagcgggaaauccuucuc
uauacaaguucucggaacagguuuuagaacagaacuucgauaggcgggag
guggaagcaccgcgaggugugaagccaucucguacuaaacga
...<<<<<<<<<<....<<<..<<<<<<<<<<.....<<<<<<.......
.>>>.....<<<<<<<..<<.....>>.....>>>>>>>...>>>...<<
<....>>>..<<<<<<...<<<.........>>>...>>>>>>.......
..<<<<<<.....<......>......>>>>>.>...<.....<<....>
>....<<<<.....<<.....>>....>>>>....<<.............
...<<<<.........>>>>.....<<<..............<<....<<
<........>>>.<<.......((.....>>))....>.>.........>
>>..................<.<<..<..........>..>>.>......
..........<<<<<..((((>>>>>...>>....>..>.>>>>>>>.>>
...............<<....>>....>>.........<<<......>>>
...............>....>>>>>>>>>>........<<<<..<<<<<<
<<.......>>>.>>>>>..>>>>...<.<........>.>.<<<<<<..
..<<<<<<<<<<<<<.<<<...<<<....>>>...>>>............
............>>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<
<<<<..<<<....<<<..<<.....>>..>>>.....>>>...<<<.<<<
<<........>>>>>>>>....>>>>>>>>>...<<<.....>>>.....
.>>>>>>...>..>.>>..<<<<<<....<<<<<....>>>>>.<<<<<<
<....<.<<<<<.<.....<<<...<<..<<<<...<<........>>..
.>>>>..>>..>>.>.....>.>>>>>.>.....>>>>>>.>...<<<<.
<<<<<.........>>>>>>>>>....<<<......>>>...<<<<.<<<
...<<<((......<<<<<<...........<<..<<.<<.<<<<.....
..<<<...<<...<<<<.......>>>>...>>........<<<......
>>>....>>>...>>>>.>>.>>.>>............))......>>>>
>>.>>>...>>>>>>><<<<<<<<<<<.....>>>>>>>>.>>>....>>
>>>>..<<<<<...<<<......<<.<<<<<....>>>>>.>>...>>>.
.>>>>>........>>>>>><......<<.....<<<.<<.......>>.
>>><<<<<....<<....<<...<<<<<<...<<.....>>.>>>>>>..
....<<<<<<....<<....<<<....>>>......>>....>>.....<
<<<......<<..<....<...............................
<.<<...>>...>.....................................
............>...<.<<<.....<........<<<<<<<........
>>.>>>>>.........>.....>>>>...>..>>............>>>
><..<<<<<.........>>>>>.>......>>>>..>>.....<<....
..>>...>>.<<<<.....>>>>.>>>>>..<<.<....<<<<<<<<.<<
...............<<<<<...............>>>>><<<.<<<<<<
......>.>>>>>.>>>............<<<<<<<<<..<<<.......
..>>>..<<<<<<<.....<<<....>>>.......>>>>>>>.<<<<<.
<<<..<<<<<<<...<<........<<<<<.......>>>>>........
>>.>>>>>..>>>>><<<<<<.......>>>>>>........<.......
....<<<<<.......>>>>>.....>....>>>>>..>>.>>>>>>>..
...>>.>>>>>>>>.>.>>>>.....>.....<<<<<........>>>>>
..<<<<<<<.<<<<.<<......<<<<.<<<<<<..<<<<<.<<<<<<<<
<.<.<<.<<<<<..<<<..............<<<...<............
....>.............>>>.....>>>..>>>>>.>>.>...<<<<<.
.>>>>>....>>>>>>>>>..>>>>>..<<<<.....>>>><<<<<<...
........>>>>>>..<<...<<<<<<<...<<<.........>>>....
.<..[.(((.>....>>>>>>>...<<<<..<<<<....>>>>..>>>>.
<<<....>>>.>>)))]......<<<<<<<.<<..))))..>>>>>>>>>
.............>>>>..>>>>>>.......<<<<.<.<<<<<<...<<
.......>>...>>>>>>...>>>>.>.......<<<<<..<<<<<..<<
<<<<<<<......>>>>>>..>>>.<<<<.......>>>>.....>>>>>
......>>>.>>....<<<<<<<....>>>.>>>>....>>..>>>>>>>
>>>>.........<<<<<<...<<<<..<<<<<<<...............
>>>>>>><<<<<<...<<<<...<<<<<<<<<<<....>>>>>>..>>>>
>...>>>>.>>>>>><.<<<....<<<<<....>>>>>....>>>>>>>>
.......>>>>>>......<<<<<.......>>>>>....<<<<<<<<<<
<<....<<<<<....>>>>>...>>>.>>>>>>.>>>.....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6xyw Cryo-EM structure of the RNA-rich plant mitochondrial ribosome.
Resolution3.86 Å
Binding residue
(original residue number in PDB)
E40 M41 G42 A43 W44 P46 A51 R52 R53 A55 R74 K75 R78 R81 K82 H84 K85 C86 D87 R88 R115 W116 K119
Binding residue
(residue number reindexed from 1)
E1 M2 G3 A4 W5 P7 A12 R13 R14 A16 R35 K36 R39 R42 K43 H45 K46 C47 D48 R49 R76 W77 K80
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
Cellular Component
GO:0005575 cellular_component

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:6xyw, PDBe:6xyw, PDBj:6xyw
PDBsum6xyw
PubMed32251374
UniProtO65448

[Back to BioLiP]