Structure of PDB 4v7h Chain AJ Binding Site BS01

Receptor Information

>4v7h Chain AJ (length=96) Species: 5541 (Thermomyces lanuginosus)

KIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKT
PNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEV

Ligand information

>4v7h Chain AA (length=1761)

uaucugguugauccugccaguagucauaugcuugucucaaaguuaagcca
ugcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcucau
uaaaucaguuauguuuauuugauagacauggauaaccgugguauucuaga
gcuaauacaugcuuaaaaucucgacccuuuggaagagauguauuuauuag
auaaaaaaucaaugucuucggacucuuugaugauucauaauaacuuuucg
aaucgcauggccuugugcuggcgaugguucauucaaauuucugcccuauc
aacuugaugguaggauaguggccuaccaugguuucaacggguacggggaa
uaaggguucgauuccggagagggagccugagaaacggcuaccacauccaa
ggaaggcagcaggcgcgcaaauuacccaauccuaauucagggagguagug
acaauaaauaacgauacagggcccauucgggucuuguaauuggaaugagu
acaauguaaauaccuuaacgaggaacaauuggaggcaagucuggugccag
cagccgcgguaauuccagcuccaauagcguauauuaaaguuguugcaguu
aaaaagcucguaguugacuuugggcccgguuggccgguccgauuuuuucg
uguacuggauuuccaacggggccuuuccuucuggcuaaccuugaguccuu
guggcucuuggcgaaccaggacuuuacuuugaaaaaauuagaguguucaa
agcaggcguauugcucgaauauauuagcauggaauaauagaauaggacuu
ugguucuauuuuguugguuucuaggaccaucguaaugauuagggacgguc
gggggcaucgguauucaauugucgaggugaaauucuuggauuuauugaag
acuaacuacugcgaaagcauuugccaaggacguuuucauuaaucaagaac
gaaaguuaggggaucgaagaugaucugguaccgucguagucuuaaccaua
aacuaugccgacuagaucgggugguguuuuuuuaaugaccacucgguacc
uuacgagaaaucaaagucgguucuggggggaguauggucgcaaggcugaa
acuuaaaggaauugacggaagggcacccuaggaguggagccugcggcuaa
uuugacucaacacggggaaacucaccagguccagacacaauaaggauuga
cagauugagagcucuuucuugauuuugugggugguggugcauggccguuu
cuaguugguggagugauuugucugcuuaauugcgauaacgaacgagaccu
uaaccuacuaaauaguggugcuagcauuugcugguuauccacuucuuaga
gggacuaucgguuucaagccgauggaaguuugaggcaauaacaggucugu
augcccuuaacguucugggccgcacgcgcgcuacacugacggagccagcg
agucuaaccuuggccgagaggucuugguaaucuugugaaacuccgucgug
cuggggauagagcauuguaauuauugcucuucaacgaggaauuccuagua
agcgcaagucaucagcuugcguugauuacgucccugcccuuuguacacac
cgcccgucgcuaguaccgauugaauggcuuagugaggccucaggaucugc
uuagagaagggggcaacuccaucucagagcggagaauuuggacaaacuug
gucauuuagaggaacuaaaagucguaacaagguuuccguaggugaaccug
cggaaggauca

...<<<<<.[.((((>>>>><<<<..<<<<<.....<.........<<<.
<<<..<<...<<..........<<.......>>..>>>>......<<...
.....<<<..<<.<<....<<<.....<<<.....<..<<......>>..
>......>>>........<<<<..<<....>>..>>>>.......<<<<.
........<<<..<<<....>>>....>>>.......>>>>.........
.......<.<........>>........>>>...>>>>..>>>.<<<...
.<<<..<<<<<<<<.......>>>>>>>>>>>......>>>..<<<<<<<
<....>>>>...>>>>.>>.<<.<<.<.........>>>.>>...<<...
.>>.....>>>>>>.........<<<....<<<.....>>>..>>>....
...>.......<<<<<<....<<<....>>>....>>>.>>>........
..<<..........>>.............<<<<(((....<<<<.....<
..))).>.......>>>>.>>>>...>>>>>.>>>>.........<<<((
.....<.<<...<<<.......<<<<<..<...<<<<<<<<<.....>>>
.>.>>>>>.......>..>>>>>..<<<......<<.......<<<<<<.
<<.<<.....>>..>>.>>>>>>..<<<<<<<.....>>>>>>><<<...
.<<<<.....>>>.>..>>>.....>>...<<<<<<<<<<<<<<<<<<..
..>>>>>>>>>>>>>>.>>>>..>>>...............<<<<<<.<<
...<<<<......<<<<<<.<..<<<......>>>......>.>>>>>.>
..........<<....>>...>>>>...>>>>.>>>>...>>>...>>.>
....<<<<<<<.......<<<<.<.....>.>>>>....>>>>>>>....
......<<<<<.....<<<<<<<<..<<........>>>>>>>>>>....
....<<..))>>....>>>>>.>>>.<<<......<<<......>>>...
.>>>..)))).]<<<<<.<<<<<<<.....<<<<<..<<<.<<<<<<...
..<<........>>..........<<<<<.<.....<<<<.<<.......
.<<<........>>>.......>>>>>>....<..<<<..<<<<<<<<..
...<<<.<<<<......>>...<<<......>>>...>>.>>>....<<<
<<.<<<...<<..<<<<<.<<<<<<....>>>>>>...>>>>>..>>..>
>>....<<<<<<.....>>>>>>.......>>>>>.....>>.>>>...>
>>>>>.>....>.>>>>>...>>.>>>>.>>>.....<<<<<<<.....<
<<....<<<................>>>...>>>......>>>>>>>...
...<..<.<<<<..............>>>>>...>.....>>>>>.....
<<<<<<<<.......>>>>>>>>...........>>>>>>>>>>.>>...
....<<.<..<<<..<<..<.<<<<<<<<.<<<....<<..<...<<<<<
<<.<<<<.<<<<....>>>>.>>>>.>>>>>>>...>..>>....>>>.>
>>>>>>>>..>>..>>>...>.>>..........<<<<<<<<....>>>>
>>>>.......

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4v7h Comprehensive molecular structure of the eukaryotic ribosome.
• Resolution: 8.9 Å
• Binding residue (original residue number in PDB): K21 R23 V31 K53 G54 P55 V56 R57 L58 P59 K61 L63 K64 S66 T67 R68 K69 T70 N72 G73 E74 K77 T78 W79 E80 T81 R85 H87 R89 Y90
• Binding residue (residue number reindexed from 1): K1 R3 V11 K33 G34 P35 V36 R37 L38 P39 K41 L43 K44 S46 T47 R48 K49 T50 N52 G53 E54 K57 T58 W59 E60 T61 R65 H67 R69 Y70

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Nov 26 14:22:07 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7h', asym_id = 'AJ', bs = 'BS01', title = 'Comprehensive molecular structure of the eukaryotic ribosome.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7h', asym_id='AJ', bs='BS01', title='Comprehensive molecular structure of the eukaryotic ribosome.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412,0015935', uniprot = '', pdbid = '4v7h', asym_id = 'AJ'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412,0015935', uniprot='', pdbid='4v7h', asym_id='AJ')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>