Structure of PDB 9cai Chain AI Binding Site BS01

Receptor Information
>9cai Chain AI (length=207) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGG
NEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAI
ISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTE
RQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRK
IRAKKAK
Ligand information
>9cai Chain B2 (length=1476) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugauugauucugucagcgcgauaugcucaaguaaaagauuaagcca
ugcaugcgauucauugaaauugcguacggcucauuagagcagauaucacc
uuauccgggauggauaacugcggaaauacuggagcuaauacaugcacccc
agcggggugcaauuauuaguguugacucugaauaaagcaguuuacuguca
gcugacucuauccggaaagggugucugcccuuucaacuagaugguaguuu
auuggacuaccaugguuguuacggguaacggagaauaaggguucgacucc
ggagagggagccuuagaaacggcuaccacguccaaggaaggcagcaggcg
cgaaacuuauccacuguuguaugagauagugacuaaaaauauaguugaau
acaaaugauucuucgaggagagggcaagucuggugccagcagccgcggua
auuccagcucuccuaguguaucucguuauugcugcgguuaaaaagcucgu
aguuggaucuagguuuaccuugaauaaaucagagugcucaauacaagcgc
uugcuugaauagcaucauggaauaaugaaauuaaugguuaagagggacaa
accgggggcauucguaucauuacgcgagaggugaaauucguggaccguag
ugagacgcccaacagcgaaagcauuugccaagaaugucuucauuaaucaa
gaacgaaagucagagguucgaaggcgauuagauaccgcccuaguucugac
cguaaacgaugccaucucgcgauucggagggugcccugccgaggagcauc
cggaaacgaaagucuuucgguuccggggguaguaugguugcaaagcugaa
acuuaaagaaauugacggaagggcaccacaaggcguggagcuugcggcuu
aauuugacucaacacgggaaaacucacccgguccggacaccaugacugac
agauugaaagcucuuucucgauuuggugguugguggugcauggccguucu
uaguugguggagugauuugucugguuuauuccgauaacgagcgagacucu
agccucuaaauaguuggcgaaucuucggguucguuaacuucuuagaggga
uaagcgguguuuagccgcacgagauugagcgauaacaggucugugaugcc
cuuagauguccggggcugcacgcgugcuacacugguggagucagcggguc
cuaugccgaaagguaucgguaaaccguugaaauucuuccauguccgggau
aggguauuguaauuauugcccuuaaacgaggaaugccuaguaagugugag
ucaucagcucacguugauuacgucccugcccuuuguacacaccgcccguc
gcuauccgggacugaacugauucgagaagaguggggacugugcggaaacc
auuuuuaucgcauugguuugaaccggguaaaagucguaacaagguagcug
uaggugaaccugcagcuggaucaucg
...<<<<<.[.((((>>>>><<.<<<<<<<.....<<..<......<<<.
<<<..<<<<<<......>>>>>>......<<.......<<<<<<<<..<<
<..<<<<<..<<.....<<.<<<.....>>>.>>......>>...<<<<<
...>>>>><<..<<<<<...<......>..>>>>>....>>.....<<<<
..>>>>.....>>>>>.>>>>>>>>>>><<<....<<<..<<<<<<<<..
.....>>>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>
>.>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>>>.
........<<<....<.....>..>>>..>...>>........<..<<<<
.......>>>>..>..<<<<<((....<.<<<<.....<<..))>>....
...>>>>>>>>>>..>>>>>>>.>>.........<<<((.....<.<<..
.<<<.<<.......<<<<<.<<<.......<..<<.......>>.<<<..
..>>>....>....>>>.>>..>>>............>>....<<<<<<.
..<...<<<<..<<..<<<<<<<<...<<<......>>>......>>>>>
>>>..>>.......<<....>>...>>>>..>..>>>.>>>...>>>...
>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>
..........<<<..<..<<..<<<<<<<<<..>>>>.>>>>>..>>...
<<..))>>...>......>>>.>>>.<<<......<<<<....>>>>...
.>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<<<..
....<<........>>..........<<<<<.<....<<<<<.....<<.
<<<........>>>.>>......>>>>>...<<.<<<..<<.<<<<<<..
..<<<.<<<<......>>...<<<......>>>...>>.>>>....<<<.
..<<<<<<<..<<<<<<<<<<<<....>>>>>>>>>>>>..>>>>>>>..
...<<<<<.....>>>>>........>>>....>>>.>>>.....>>>>>
>>.....>.>>>>>...>>.>>>>.>>>.....<<.<<<<......<<.<
<.<<<<<....>>>>>.>>....>>.......>>>>.>>......<....
<<<<<<..........>>>>>>....>.....>>>>>>....<<<<<<<<
.......>>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
..<<<<<<<....<<<<<<<<.<<<.<<<<<<<<...<<<..>>>...>>
>>>>>>.>>>.>>>>>>>>...>>>>>>>...>.>>...>.....<<<<<
<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.
Resolution2.59 Å
Binding residue
(original residue number in PDB)		G2 I3 R5 H9 K10 R11 Y12 T14 A16 P19 P21 K23 K24 R25 K26 F27 L29 R31 A33 A34 R42 R44 L45 R47 T48 R49 G50 N52 K54 Y55 R56 L58 N64 S66 A68 Q71 T73 R74 T86 V97 K98 G99 R141 H144 T145 K148 Y149 R152 R174 S176 S178 Q181
Binding residue
(residue number reindexed from 1)		G1 I2 R4 H8 K9 R10 Y11 T13 A15 P18 P20 K22 K23 R24 K25 F26 L28 R30 A32 A33 R41 R43 L44 R46 T47 R48 G49 N51 K53 Y54 R55 L57 N63 S65 A67 Q70 T72 R73 T85 V96 K97 G98 R140 H143 T144 K147 Y148 R151 R173 S175 S177 Q180
External links
PDB RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum9cai
PubMed39209556
UniProtP48156|RS8_CAEEL Small ribosomal subunit protein eS8 (Gene Name=rps-8)

[Back to BioLiP]