Structure of PDB 5t2a Chain AG Binding Site BS01

Receptor Information

>5t2a Chain AG (length=141) Species: 5661 (Leishmania donovani)

VRMHGNGRGKASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIG
MELRDSMGIAQVKNVTGRKILRILKHNGLAPEIPEDLYFLVKRATQMRKH
LERHTTDRDTKYRLILVESRIHRLARYYKRVKQLPPTWKYE

Ligand information

>5t2a Chain A (length=1603)

agaccugaguguggcaggacuacccgccgaacuuaagcauauuacucagc
ggaggaaaagaaaacaaccgugauucucucagugagcggcgagcgaagag
ggaacgaacucguugccgaaucgggucuuacaaggccuugaguuguggca
caaauaucugguuggugcaggaguggcgaaauucaagcgcaaagcaaacc
cguugcugaauacaacccuucaugugaguauugagccaaagaagguguua
gcccauugagccauaaaccugagcgccucaugaagcgaguagcacuguuu
gggaaugcagugucaaguuggcagguauuugucugccaaaguuaaauaca
gaguaggaagaccgauagcgaacaaguagcgugagcgaaaguuugaaaag
cacuuuggaaagagagugaaauagaaccugaagucgugacaaagacaaug
gaaguaccuccauuucaacggccagaaccagcccuacugcauuauccugu
cgggggucaaaauccggcgggcaaaagugcaagaauuuugggucuuggug
aaaugagcggaguauuugagcugugcacggccgcacgcacugguuucuuc
uccgugaugcuccauguuggcgaugaaauggggugcccccacccgucuug
aaacacggaccaaggagucaaacagacgcgcaagggaggagauaugguug
ccaguacuucucucguacugaaagggagaugcaauaugcaucuguggugu
gcacacgucauuugcccaacaccgaccggcccuggguugcguuggagugu
gccuguuuggacccgaaagguggugaacuaugccugaacaaggugaagcc
cggggaaacccagguggaggccuguagcgaugcugacgugcaaaucgcuc
guaugauuuggguaucggagcgaaagacucaucgaaccaccuaguagcug
guucacaucgaaguuucccucaggauagcuggugcuaguagaaguauugu
gcgguaaagcaaaugauuagagggaccuauucucaaacuuuaaaugugca
aacaaaccgugccuuagccaacugcaaggccggaaagaaaagaauuagag
gcaccaagugggccuucuucgguaagcggagcaggcgaugcggaaugaac
cgcuuagggauauguggcgucaaaacuuaugggcucauucucgauacgug
aaaaggguguugguggauaaauccaccggccccgaaaauggaugacgcuu
aagcccaauuagugguugcccauuauuccuuugguaagggcggaaacaaa
cggagaaaguguagcccuuccgauguagauguggccuggagguuaggacg
aagcuuauggcgugagccuaagauggaccggccucuagugcagaucuugg
uuggcguagcaaagaucuaacggagauauacaacaugcaacguuggauac
uggagcggggaaggauuucgugccaacggcacucguacacgaguuguucg
gaaacugagcacaacguuauaucguuuuguuaggaaagugaagguacuga
aaaggggcaacagagaaccugggauuauauuccaaaaagaaauugcaugu
ggg

......................<<<<<......<......>.......>>
>>.>.........<<....>>..<<<<<<......<<.....>>....>>
>>>>...<<<...<<<<...<<<<<<<......>>>>>.>>.....>>>>
..........<..<<....<<....<......<<<<......<<<<....
...>>>>.....<<........>>......>>>><<.......((.....
>>)).......>......>>......>>>............<<<<<<<..
......>>>>>>>......<<<<<........>>>>>..>>>........
............................<<....>>..............
..<<<<....>>>>..................................((
(..<<<<<<.<<<<<<..((.<<<<.<<<<<<<<....<<<<<..<<<<<
<<<<........>>>>>>>>>...>>.>>>.........>>>>..>>>>.
.......<<<<<.....<<...<<<..<<..>>....>>>...>.>...>
>>>>.....<<<<...>>>>))..>>>>>>>>>>>>..))).<<<<....
....>>>><<<<<<....<<<<<<<.<<<<<..<<<...<<.<.......
.....>>>...>>>...<<....>>..<<<<<.....>>>>>...<<<<<
...<<.<<.>>.>>....>>>>><<<<<<<<<.>>>>>>.>>>...>>>>
>.>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<
.<<<....>>>.>>>.....>>>...<<<..<<.<<........>>>>.>
>>....>>>>>>>>>...<<.......>>......>>>>>>...>..>.>
>...<<<<<....<.<<<....>>>.><<<<<<<<<.....<<...<<<<
<<<...<<<....<<<....<<<..>>>....>>>..>.>>...>>>>>>
>.....<<<.<<<<<.<<.....>>>>>>>>>>...........>>...>
>>>>>>.>>..<<<<.<<<<<.....>>>>>.>>>>...<<<<......>
>>>..<<<<<<<...<<<(((......<..<<<<........<.......
....<<<.<<<<<<<<<<..>>>>>>>>>>>>>..........))).>..
..>>>>.>.........>>>...>>>>>>>((((.<<<<<..........
.>>>>.........>>>>>))))....>>>>>....<<<<<<<<......
...<<<..<<<....>>>.>>>.......>>>>>>>>........>>>>>
>..............<<<<<<<..................>>>>>>>...
.................<<<<<....<<.....>>..>>>>>....<<..
........<<.<<<<<......>>>>...............<<...>>..
....>.>>..........<<<...........>....>>.>>........
...

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5t2a Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes.
• Resolution: 2.9 Å
• Binding residue (original residue number in PDB): H123 R127 K140
• Binding residue (residue number reindexed from 1): H122 R126 K139

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 21:21:03 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5t2a', asym_id = 'AG', bs = 'BS01', title = 'Structures and stabilization of kinetoplastid-sp...led by comparing leishmanial and human ribosomes.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5t2a', asym_id='AG', bs='BS01', title='Structures and stabilization of kinetoplastid-sp...led by comparing leishmanial and human ribosomes.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '5t2a', asym_id = 'AG'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='5t2a', asym_id='AG')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>