Structure of PDB 6hiv Chain AF Binding Site BS01

Receptor Information
>6hiv Chain AF (length=442) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSIFSPRYDWRTSGVHDIAPRDEGDFLYQGPQHVLPGAHPLPLHHPHNTI
TRPVISPYIPSPQRSHPYFTAPLPELPHFSTTKPIVYTYGTMKERIIAPV
FNLKNEVIYTRELDPFIFGMYPEVEELSKNLTYWMVRCQNFASKWDYETR
EIWRKAKKNWPNTGMGMPRVGNRKNHLYTWGGRTKPSKPWNMLMPTMDVK
TWSKSNRMMLTLKMLQGRLQVVDRLTLEEPTQECYLELCRNMSWDVRHTG
GGVLFMDGGSRITPSSEFDRAFFFGSFFNGRNKIVRPTVLCDEQYDYNKT
AAKQRMKGPKGAKNPIPINRFNAYDAMKHDRLVITEGALMQLEDELYEHK
LQILPPHIRNQLPEYGYLDSEALGDCVPSLKTIQMEAAARTEEAESDMYK
SFIDNPYNPWKDNMDASYAVDGADGTVQKFVDGKKVSWSMLS
Ligand information
>6hiv Chain AA (length=591) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
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.......>>>..............<<<<........>>>><<<<......
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>>....<<<<............<...............<<<.......>>
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>>>>>>>>.................................
Receptor-Ligand Complex Structure
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PDB6hiv Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Resolution7.8 Å
Binding residue
(original residue number in PDB)
S18 F21 S22 W27 R28 R38 H61 Y106 E140 E142 E143 K146 M152 A159 S160 W162 Y164 E165 T166 R167 K175 R186 G188 N192 H193 L194 Y195 T196 R200 T201 K202 K217 K221 R224 R298 Y314 A319 K320 R322 M323 K327 Y341 K345 H366 I370
Binding residue
(residue number reindexed from 1)
S1 F4 S5 W10 R11 R21 H44 Y89 E123 E125 E126 K129 M135 A142 S143 W145 Y147 E148 T149 R150 K158 R169 G171 N175 H176 L177 Y178 T179 R183 T184 K185 K200 K204 R207 R281 Y297 A302 K303 R305 M306 K310 Y324 K328 H349 I353
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6hiv, PDBe:6hiv, PDBj:6hiv
PDBsum6hiv
PubMed30213880
UniProtA0A1G4HYD1

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