Structure of PDB 6eri Chain AF Binding Site BS01

Receptor Information
>6eri Chain AF (length=171) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAK
GLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYS
FLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPERGMDVCIT
TTAKTDKEAYKLLSLMGMPFR
Ligand information
>6eri Chain AA (length=2696) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucaaacgaggaaaggcuuacgguggauaccuaggcacccagagacgagga
agggcguauuaaucgacgaaaugcuucggggaguugaaaauaagcagaga
uccggagauucccgaauaggucaaccuuucgaacuucugcugaauccaug
ggcaggcaagagacaaccuggcgaacugaaacaucuuaguagccagagga
aaagaaagcaaaagcgauucccguaguagcggcgagcgaaaugggagcag
ccuaaaccgugaaaacgggguugugggagagcaauacaagcgucgugcug
cuaggcgaaucaguggagugcggaacccuagauggugaaaguccaguagc
cgaaagcaucacuagcuuaugcucugacccgaguagcauggggcacgugg
aaucccgugugaaucagcaaggaccaccuugcaaggcuaaauacuccugg
gugaccgauagcgaaguaguaccgugagggaagggugaaaagaaccccca
ucggggagugaaauagaacaugaaaccguaagcucucaagcagugggagg
gggaccagacccugaccgcgugccuguugaagaaugagccggcgacucau
aggcaguggcuugguuaagggaacccaccggagccguagcgaaagcgagu
cuucauagggcaauugucacugcuuauggacccgaaccugggugaucuau
ccaugaccaggaugaagcuugggugaaacuaaguggagguccgaaccgac
ugauguugaagaaucagcggaugaguugugguuaggggugaaaugccacu
cgaacccagagcuagcugguucuccccgaaaugcguugaggcgcagcagu
ugacuggacaucuagggguaaagcacuguuucggugcgggccgcgguacc
aaaucgaggcaaacucugaauacuagauaugaccuccaaauaacaggggu
caaggucggccagugagacgaugggggauaagcuucaucgucgagaggga
aacagcccggaucaccagcuaaggccccuaaaugaccgcucagugauaaa
ggagguaggggugcagagacagccaggagguuugccuagaagcagccacc
cuugaaagagugcguaauagcucacugaucgagcgcucuugcgccgaaga
ugaacggggcuaagcggucugccgaagcugugggauguaaaaaaacaucg
guaggggagcguuccguguuagggagaaacgcgugcgugagccgcguugg
acgaagcggaagcgagaaugucggcuugaguaacgcaaacauuggugaga
auccaaugccccgaaaaccuaaggguuccuccgcaagguucguccacgga
gggugagucagggccuaagaucaggccgaaaggcguagucgauggacaac
aggugaauauuccuguacuaccccuuguuggucccgagggacggaggagg
cuagguuagccgaaagaugguuaucgguucaaggacgcaaggugacccgg
guaagaagggguagagaaaaugccucgagccaauguucgaguaccaggcg
cuacggcgcugaaguaaccgaugccauacucccaggaaaagcucgaacga
ccuucaacaaaaggguaccuguacccgaaaccgacacagguagguaggua
gagaauaccuaggggcgcgagacaacucucucuaaggaacucggcaaaau
agccccguaacuucgggagaaggggugcccccucacaaagggggucgaag
ugaccaggcccgggcgacuguuuaccaaaaacacaggucuccgcaaaguc
guaagaccauguaugggggcugacgccugcccagugccggaaggucaagg
aaguuggugaccugacaggggagccggcgaccgaagccccggugaacggc
ggccguaacuauaacgguccuaagguagcgaaauuccuugucggguaagu
uccgacccgcacgaaaggcguaacgaucugggcacugucucggagagagg
cucggugaaauagacaugucugugaagaugcggacuaccugcaccuggac
agaaagacccuaugaagcuuuacuguucccugggauuggcuuauucuaac
cuugugucaggaccuacgggccaagggacauucucagguagacaguuucu
auggggcguaggccucccaaaagguaacggaggcgugcaaagguuuccuc
gggccggacggagauuggcccucgagugcaaaggcagaagggagcuugac
ugcaagacccacccgucgagcagggacgaaagucggccuuagugauccga
cggugccgaguggaagggccgucgcucaacggauaaaaguuacucuaggg
auaacaggcugaucuuccccaagaguucacaucgacgggaagguuuggca
ccucgaugucggcucuucgccaccuggggcuguaguauguuccaaggguu
gggcuguucgcccauuaaagcgguacgugagcuggguucagaacgucgug
agacaguucgguccauauccggugugggcguuagagcauugagaggaccu
uucccuaguacgagaggaccgggaaggacgcaccucugguguaccaguua
ucgugcccacgguaaacgcuggguagccaagugcggagcggauaacugcu
gaaagcaucuaaguaguaagcccaccccaagaugagugcucuccua
.............<<<<<<<<<<.....<<..<<<<<<<<<<<.<.....
.<<<<<<.....((.>>>.....<<<<<<<..<<.))......>>.....
>>>>>>>...>>>....<<<....>>>......<<<<<<<<.........
>>>>>..>>>.>....<<<<<<.....<......>......>>>>>.>..
.......<<....>>..<<<<<<.....<<.....>>....>>>>>>..<
<<....<<<<....>>>>......<<<<<<<<......<<....<<<.<<
<<.<<<...<<.<<.....>>.>>((......<<<.....))>>>...>>
>...>>>>.>>>....>>..>>>>>..>>>.....<<<<<<<<.......
..>>>>>>>>......<<<<<..<<<<>>>>>..>>>......>>.>>>>
>>>.>>...............<<....>>....>>.........<<<<..
..>>>>..................>>>>>>>>>>........<<<<..<<
<<.......>>>>..>>>>...<.<........>.>.<<<<<<....<<<
<<<<<<<<<...<<<...<<.......>>...>>>...<<....>>..<<
<<.....>>>>.....>>>>>>>>>>>>..<<.<...<<<<<<.....<.
<<<<<<<..<<<....<<<<<<......>>>>>>.....>>>...<<<.<
<<<<........>>>>>>>>....>>>>>>>.>...<<<.....>>>...
...>>>>>>......>.>>..<<<<<<....<<<<<....>>>>><<.<<
<<<<<....<<<<<<......<<...<<<<<<<<...<...........>
...>>>>>>>>..>>.......>>>>>>..<<<<<...........>>>>
>..>>>>>>>..>>..<<<<<<<<<<......>>>>>>>>>>....<<<.
.....>>>...<<<<.<<<...<<<(((.....<<<<<<...........
<<..<<<<<<<<<<.......<.<<<.<<<...<<.........>>...>
>>.........<<......>>...>>>.>...>>>>>>>>>>.>>.....
.....))).....>>>>>>.>>>...>>>>>>><<<<<......>>>>>.
...>>>>>><<<<<<<<...........<<<<<.<<....>>>>>>.>..
.....>>>>>>.>>.....>>>>>><......<<.....<<<<<<.....
..>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>>
>>....((<<<<.<<...<<<...<<<....>>>...>>>...>>...<<
<<<........>>>>>))<<<<<.<<<<.<<<<.<<<<....<<<<..<<
<..<<<<<<<<<<.....(((..>>>>>....<<<<<...<<<.<<....
>>.....<<<<<<.......>>>>>>..>>>..>>>>>.....<..<<<<
<....>>>>>...>>>>>>...>>>...>>>>.........>>>>...>>
>>....>>.>>.>>>>>>>>>..>>.....<<......>>>>>>>.<<<<
.....>>>>..>>>>..<<<<....<<<<<<<<.<<..............
.<<<<<...............>>>>><<<<<<.......>>>>>>.....
.......<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<<
....>>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<...<<
..<<<<<<..<<<<.>>>>...>>>>>>..>>...>>>>>>>>..>>>>>
<<<<<<.......>>>>>>........<...........<<<<<<.....
>>>>>>.....>....>>>>>..>>.>>>>>>>.....>>.>>>>>>>>.
>>>>>>.....>.....<<<<<........>>>>>..<<<<<<<<.<<<.
.<......<<<<.<<<<<<..<<<<<..<<<<<<<..<<.<.>.>>...<
<<<<.<<<..........>>>>>>>>.....>>>>>>>...>>>>>..<<
<<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<<..
<<<<<<<.......>>>>>>>....<<...(((>>....>>>>>>>...<
<<<..<<<......>>>..>>>>.<<<....>>>.>>))).......<<<
<<<<.<<..>>>>..>>>>>>>>>.............>>>>..>>>>>>.
......<<<<.<.<<<<<<...<<.......>>...>>>>>>...>>>>.
>.......<<<<<.<.<<<<..<<<<<<<<........>>>>>..>>>.<
<<<<.....>>>>>.....>>>>...>...>>>.>>....<<<<<<<...
.>>>.>>>>....>...>>>>>>>>>>>....<<<<<<<...<.<<..<<
<<<<<...............>>>>>>>.<<<<<...<<<<...<<<<<<<
<<<<))).>>>>>>...>>>>>...>>>>.>>>>>..<.<<.<.<<<<<<
...........>>>>>>..>>>>.>>.>.......>>>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6eri Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.
Resolution3.0 Å
Binding residue
(original residue number in PDB)
V50 N52 G54 G56 T83 A85 K86 F92 S136 F137 D138 N142 S144 V145 G146 F147 R148 G166 D168
Binding residue
(residue number reindexed from 1)
V37 N39 G41 G43 T70 A72 K73 F79 S123 F124 D125 N129 S131 V132 G133 F134 R135 G144 D146
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6eri, PDBe:6eri, PDBj:6eri
PDBsum6eri
PubMed29610536
UniProtP82192|RK5_SPIOL Large ribosomal subunit protein uL5c (Gene Name=RPL5)

[Back to BioLiP]