Structure of PDB 4v7h Chain AC Binding Site BS01

Receptor Information

>4v7h Chain AC (length=188) Species: 5541 (Thermomyces lanuginosus)

SKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRT
QDVLGENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESM
KFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADG
FLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRDPA

Ligand information

>4v7h Chain AA (length=1761)

uaucugguugauccugccaguagucauaugcuugucucaaaguuaagcca
ugcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcucau
uaaaucaguuauguuuauuugauagacauggauaaccgugguauucuaga
gcuaauacaugcuuaaaaucucgacccuuuggaagagauguauuuauuag
auaaaaaaucaaugucuucggacucuuugaugauucauaauaacuuuucg
aaucgcauggccuugugcuggcgaugguucauucaaauuucugcccuauc
aacuugaugguaggauaguggccuaccaugguuucaacggguacggggaa
uaaggguucgauuccggagagggagccugagaaacggcuaccacauccaa
ggaaggcagcaggcgcgcaaauuacccaauccuaauucagggagguagug
acaauaaauaacgauacagggcccauucgggucuuguaauuggaaugagu
acaauguaaauaccuuaacgaggaacaauuggaggcaagucuggugccag
cagccgcgguaauuccagcuccaauagcguauauuaaaguuguugcaguu
aaaaagcucguaguugacuuugggcccgguuggccgguccgauuuuuucg
uguacuggauuuccaacggggccuuuccuucuggcuaaccuugaguccuu
guggcucuuggcgaaccaggacuuuacuuugaaaaaauuagaguguucaa
agcaggcguauugcucgaauauauuagcauggaauaauagaauaggacuu
ugguucuauuuuguugguuucuaggaccaucguaaugauuagggacgguc
gggggcaucgguauucaauugucgaggugaaauucuuggauuuauugaag
acuaacuacugcgaaagcauuugccaaggacguuuucauuaaucaagaac
gaaaguuaggggaucgaagaugaucugguaccgucguagucuuaaccaua
aacuaugccgacuagaucgggugguguuuuuuuaaugaccacucgguacc
uuacgagaaaucaaagucgguucuggggggaguauggucgcaaggcugaa
acuuaaaggaauugacggaagggcacccuaggaguggagccugcggcuaa
uuugacucaacacggggaaacucaccagguccagacacaauaaggauuga
cagauugagagcucuuucuugauuuugugggugguggugcauggccguuu
cuaguugguggagugauuugucugcuuaauugcgauaacgaacgagaccu
uaaccuacuaaauaguggugcuagcauuugcugguuauccacuucuuaga
gggacuaucgguuucaagccgauggaaguuugaggcaauaacaggucugu
augcccuuaacguucugggccgcacgcgcgcuacacugacggagccagcg
agucuaaccuuggccgagaggucuugguaaucuugugaaacuccgucgug
cuggggauagagcauuguaauuauugcucuucaacgaggaauuccuagua
agcgcaagucaucagcuugcguugauuacgucccugcccuuuguacacac
cgcccgucgcuaguaccgauugaauggcuuagugaggccucaggaucugc
uuagagaagggggcaacuccaucucagagcggagaauuuggacaaacuug
gucauuuagaggaacuaaaagucguaacaagguuuccguaggugaaccug
cggaaggauca

...<<<<<.[.((((>>>>><<<<..<<<<<.....<.........<<<.
<<<..<<...<<..........<<.......>>..>>>>......<<...
.....<<<..<<.<<....<<<.....<<<.....<..<<......>>..
>......>>>........<<<<..<<....>>..>>>>.......<<<<.
........<<<..<<<....>>>....>>>.......>>>>.........
.......<.<........>>........>>>...>>>>..>>>.<<<...
.<<<..<<<<<<<<.......>>>>>>>>>>>......>>>..<<<<<<<
<....>>>>...>>>>.>>.<<.<<.<.........>>>.>>...<<...
.>>.....>>>>>>.........<<<....<<<.....>>>..>>>....
...>.......<<<<<<....<<<....>>>....>>>.>>>........
..<<..........>>.............<<<<(((....<<<<.....<
..))).>.......>>>>.>>>>...>>>>>.>>>>.........<<<((
.....<.<<...<<<.......<<<<<..<...<<<<<<<<<.....>>>
.>.>>>>>.......>..>>>>>..<<<......<<.......<<<<<<.
<<.<<.....>>..>>.>>>>>>..<<<<<<<.....>>>>>>><<<...
.<<<<.....>>>.>..>>>.....>>...<<<<<<<<<<<<<<<<<<..
..>>>>>>>>>>>>>>.>>>>..>>>...............<<<<<<.<<
...<<<<......<<<<<<.<..<<<......>>>......>.>>>>>.>
..........<<....>>...>>>>...>>>>.>>>>...>>>...>>.>
....<<<<<<<.......<<<<.<.....>.>>>>....>>>>>>>....
......<<<<<.....<<<<<<<<..<<........>>>>>>>>>>....
....<<..))>>....>>>>>.>>>.<<<......<<<......>>>...
.>>>..)))).]<<<<<.<<<<<<<.....<<<<<..<<<.<<<<<<...
..<<........>>..........<<<<<.<.....<<<<.<<.......
.<<<........>>>.......>>>>>>....<..<<<..<<<<<<<<..
...<<<.<<<<......>>...<<<......>>>...>>.>>>....<<<
<<.<<<...<<..<<<<<.<<<<<<....>>>>>>...>>>>>..>>..>
>>....<<<<<<.....>>>>>>.......>>>>>.....>>.>>>...>
>>>>>.>....>.>>>>>...>>.>>>>.>>>.....<<<<<<<.....<
<<....<<<................>>>...>>>......>>>>>>>...
...<..<.<<<<..............>>>>>...>.....>>>>>.....
<<<<<<<<.......>>>>>>>>...........>>>>>>>>>>.>>...
....<<.<..<<<..<<..<.<<<<<<<<.<<<....<<..<...<<<<<
<<.<<<<.<<<<....>>>>.>>>>.>>>>>>>...>..>>....>>>.>
>>>>>>>>..>>..>>>...>.>>..........<<<<<<<<....>>>>
>>>>.......

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4v7h Comprehensive molecular structure of the eukaryotic ribosome.
• Resolution: 8.9 Å
• Binding residue (original residue number in PDB): K8 R9 K10 S139 G140 K141 R146 A147 K151 I158 H159 Q162 V164 H174 L176 M177 R178 Q179 G180 V181 G183 K185
• Binding residue (residue number reindexed from 1): K3 R4 K5 S134 G135 K136 R141 A142 K146 I153 H154 Q157 V159 H169 L171 M172 R173 Q174 G175 V176 G178 K180

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Nov 26 15:14:50 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7h', asym_id = 'AC', bs = 'BS01', title = 'Comprehensive molecular structure of the eukaryotic ribosome.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7h', asym_id='AC', bs='BS01', title='Comprehensive molecular structure of the eukaryotic ribosome.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003723,0003735,0006412,0015935', uniprot = '', pdbid = '4v7h', asym_id = 'AC'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0006412,0015935', uniprot='', pdbid='4v7h', asym_id='AC')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>