Structure of PDB 8ovs Chain AAA Binding Site BS01
Receptor Information
>8ovs Chain AAA (length=276) Species:
630
(Yersinia enterocolitica) [
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GSMQYFAQIVNREENKWPSEPINKYIHMIWIGPKNISDKNIRLSLQTAQK
NPDYSTTIIYDSGISGYEAARNFMSEKFKASKITLVDIRNKGYFHQLQQE
PSFTYYEEVIRNKKFAQASDILRLLVLKYEGGIYKDIDDIQIKGFGSLAF
PKGIGVMREYVPEAGKSAAFPNSPIAATKNNPVVNKTLELAVENYRHGEK
NVLKLAGPDVFTKALYQEIPGMCSQVLGTQLEQFELAKRQALKDEQLTLQ
EKAKISRPYKAIRGLSEYVCNGADHS
Ligand information
Ligand ID
UDP
InChI
InChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey
XCCTYIAWTASOJW-XVFCMESISA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.0
C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370
O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370
O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0
C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01
O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
Formula
C9 H14 N2 O12 P2
Name
URIDINE-5'-DIPHOSPHATE
ChEMBL
CHEMBL130266
DrugBank
DB03435
ZINC
ZINC000004490939
PDB chain
8ovs Chain AAA Residue 401 [
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Receptor-Ligand Complex Structure
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PDB
8ovs
Tyrosine-modifying glycosylation by Yersinia effectors.
Resolution
1.123 Å
Binding residue
(original residue number in PDB)
I43 W44 I45 F129 A130 S133 D150 I151 D152
Binding residue
(residue number reindexed from 1)
I29 W30 I31 F115 A116 S119 D136 I137 D138
Annotation score
4
External links
PDB
RCSB:8ovs
,
PDBe:8ovs
,
PDBj:8ovs
PDBsum
8ovs
PubMed
38703997
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