Structure of PDB 8oms Chain AAA Binding Site BS01

Receptor Information
>8oms Chain AAA (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDVTU
InChIInChI=1S/2C8H11NO2.2O.V/c2*1-3-6-8(11)7(10)4-5-9(6)2;;;/h2*4-5,11H,3H2,1-2H3;;;/q;;;;+4/p-2
InChIKeyAZLTYIAFEATFKJ-UHFFFAOYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CCC1=C2C(=[O-][V+4]3(=O)(=O)(O2)[O-]=C4C=CN(C(=C4O3)CC)C)C=CN1C
CACTVS 3.385CCC1=C2O[V+4]3(=O)(=O)(OC4=C(CC)N(C)C=CC4=[O-]3)[O-]=C2C=CN1C
FormulaC16 H20 N2 O6 V
Namebis-[(1-methyl-2-ethyl-3-hydroxy-4(1H)-pyridinone)]-V(IV)O2;
2,2'-diethyl-3,3'-dimethyl-8,8'-spirobi[7$l^{3},9-dioxa-3-aza-8$l^{8}-vanadabicyclo[4.3.0]nona-1,4,6-triene] 8,8-dioxide
ChEMBL
DrugBank
ZINC
PDB chain8oms Chain AAA Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8oms Implications of Protein Interaction in the Speciation of Potential V IV O-Pyridinone Drugs.
Resolution1.1 Å
Binding residue
(original residue number in PDB)
G4 R5 C6 E7
Binding residue
(residue number reindexed from 1)
G4 R5 C6 E7
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8oms, PDBe:8oms, PDBj:8oms
PDBsum8oms
PubMed37195003
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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