Structure of PDB 8boy Chain AAA Binding Site BS01

Receptor Information
>8boy Chain AAA (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDR0I
InChIInChI=1S/C14H12N2.C7H9N5.C2H2.CH3.Pt/c1-9-3-5-11-7-8-12-6-4-10(2)16-14(12)13(11)15-9;1-11-4-7(12(2)5-11)6-3-8-10-9-6;1-2;;/h3-8H,1-2H3;3-4H,1-2H3,(H,8,9,10);1-2H;1H3;/q-2;+1;;;+4
InChIKeyDGCRSFURYLTMIA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Cn1c(c[n+](C)c1[Pt++]2(C)N3C(=CC=C4C=CC5=CC=C(C)N2C5=C34)C)c6[nH]nnc6.C=C
OpenEye OEToolkits 3.1.0.0CC1=CC=C2C=CC3=CC=C(N4C3=C2N1[Pt+2]45(C=C5)(C)c6n(c(c[n+]6C)c7cnn[nH]7)C)C
FormulaC24 H26 N7 Pt
Name1-[1,3-dimethyl-4-(1~{H}-1,2,3-triazol-5-yl)imidazol-1-ium-2-yl]-1,2',11'-trimethyl-spiro[1$l^{6}-platinacycloprop-2-ene-1,15'-1,12-diaza-15$l^{6}-platinatetracyclo[10.2.1.0^{5,14}.0^{8,13}]pentadeca-2,4,6,8,10,13-hexaene]
ChEMBL
DrugBank
ZINC
PDB chain8boy Chain AAA Residue 210 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8boy Impact of Hydrophobic Chains in Five-Coordinate Glucoconjugate Pt(II) Anticancer Agents.
Resolution1.33 Å
Binding residue
(original residue number in PDB)		D119 R125
Binding residue
(residue number reindexed from 1)		D119 R125
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

View graph for
Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8boy, PDBe:8boy, PDBj:8boy
PDBsum8boy
PubMed36768690
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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