Structure of PDB 7qh9 Chain AAA Binding Site BS01

Receptor Information
>7qh9 Chain AAA (length=492) Species: 1282 (Staphylococcus epidermidis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKQTYMIVNELDVNKGGMTTAMLTRSKFFLDNEISGDIITFDFKANYKDI
LKELVQSKKMDKRTQMHNPFIYFKNISNLQHKKYNYTMTRNLSNLLKDSV
EIKENSRISRFFNIMSREYLAYKRETEQETIFDLFKNNLRYKRIYFYKGK
IVKTEVFNSDNNLIAEQFYDDNGYLYLYRQINPEKKSIGKTYLVCKEKQF
KNNVEFCSYFLDKLIPDINDNIIICDGPGSFPKILKTNHKNVKKFAVIHV
NHYKNFDDTGAVKKQEDYILRNANKINGVVMLTEAQKKDIIEKYKITNAY
VISNFINITDDYRDKNDNKVVGHISRLVPQKGLPYLIDVAKKVVEQDNSV
EFHLYGTGEEKSKIENLIQESNLTNNVKLLGYTTNAIEKIKDFRCVISTS
QFEGQGLSLIEAMLLKKPVVAFDVKYGPSDFVKDGKNGYLIENKDIKKMA
NKILKLLHDKELSKSLGKHGRDTIIDMYQPEKLMVKWKQLFN
Ligand information
Ligand IDCWI
InChIInChI=1S/C10H25O18P3/c11-5(1-25-29(17,18)19)9(15)7(13)3-27-31(23,24)28-4-8(14)10(16)6(12)2-26-30(20,21)22/h5-16H,1-4H2,(H,23,24)(H2,17,18,19)(H2,20,21,22)/t5-,6+,7+,8-,9-,10+
InChIKeyWSKFFGXJZASWLI-UXAOAXNSSA-N
SMILES
SoftwareSMILES
CACTVS 3.385O[C@@H](CO[P](O)(O)=O)[C@H](O)[C@H](O)CO[P](O)(=O)OC[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O
CACTVS 3.385O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)CO[P](O)(=O)OC[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O
OpenEye OEToolkits 2.0.7C(C(C(C(COP(=O)(O)OCC(C(C(COP(=O)(O)O)O)O)O)O)O)O)OP(=O)(O)O
OpenEye OEToolkits 2.0.7C([C@H]([C@H]([C@H](COP(=O)(O)OC[C@H]([C@H]([C@H](COP(=O)(O)O)O)O)O)O)O)O)OP(=O)(O)O
FormulaC10 H25 O18 P3
Name[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl] [(2~{S},3~{R},4~{R})-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain7qh9 Chain AAA Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7qh9 Structure of TarM2_G117R-UDP-4RboP-Glc
Resolution2.689 Å
Binding residue
(original residue number in PDB)		V8 N9 E10 K15 G17 M18 T19 N203 G227 P228 G229 S230 K233
Binding residue
(residue number reindexed from 1)		V8 N9 E10 K15 G17 M18 T19 N203 G227 P228 G229 S230 K233
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 03:47:17 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7qh9', asym_id = 'AAA', bs = 'BS01', title = 'Structure of TarM2_G117R-UDP-4RboP-Glc'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7qh9', asym_id='AAA', bs='BS01', title='Structure of TarM2_G117R-UDP-4RboP-Glc')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0016757', uniprot = '', pdbid = '7qh9', asym_id = 'AAA'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016757', uniprot='', pdbid='7qh9', asym_id='AAA')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>