Structure of PDB 7p97 Chain AAA Binding Site BS01

Receptor Information
>7p97 Chain AAA (length=203) Species: 882378 (Mycetohabitans rhizoxinica HKI 454) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIWAVVPLKAPECAKTRLAGVLSHAARQALFFSMASHVIGTLRASPRIAS
LLVVTPSESTAEMARAAGAEILWGPPDEGMANACSRAMAHIAAAGGERVM
FVPGDLPLLDEAAIDMLSRAPVDAIGMAPNRDGHGTNGLICRPGAIPLFF
SGPSFSAHQNAARRAGIDVWVVRSREWALDVDLPADLEEFESSVRDAKRR
VLC
Ligand information
Ligand ID6WI
InChIInChI=1S/C13H19N5O14P2/c14-13-16-9-6(10(22)17-13)15-3-18(9)11-8(21)7(20)5(31-11)2-30-34(27,28)32-33(25,26)29-1-4(19)12(23)24/h3-5,7-8,11,19-21H,1-2H2,(H,23,24)(H,25,26)(H,27,28)(H3,14,16,17,22)/t4-,5-,7-,8-,11-/m1/s1
InChIKeyUBONPDGCIQEDRL-QWEIRQIHSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH](O)C(O)=O)[CH](O)[CH]3O
OpenEye OEToolkits 2.0.7c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC(C(=O)O)O)O)O)N=C(NC2=O)N
OpenEye OEToolkits 2.0.7c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@H](C(=O)O)O)O)O)N=C(NC2=O)N
CACTVS 3.385NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@@H](O)C(O)=O)[C@@H](O)[C@H]3O
FormulaC13 H19 N5 O14 P2
Name3-(guanosine-5'-diphospho)-D-glycerate;
3GPPG;
(2~{R})-3-[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-oxidanyl-propanoic acid
ChEMBL
DrugBank
ZINC
PDB chain7p97 Chain AAA Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7p97 Diversification by CofC and Control by CofD Govern Biosynthesis and Evolution of Coenzyme F 420 and Its Derivative 3PG-F 420.
Resolution2.35 Å
Binding residue
(original residue number in PDB)
P18 L19 K20 V65 D88 E89 G90 M91 A94 P114 D116 G146 T147 F161 S162 S165 D193
Binding residue
(residue number reindexed from 1)
P7 L8 K9 V54 D77 E78 G79 M80 A83 P103 D105 G135 T136 F150 S151 S154 D182
Annotation score4
Enzymatic activity
Enzyme Commision number 2.7.7.106: 3-phospho-D-glycerate guanylyltransferase.
Gene Ontology
Molecular Function
GO:0005525 GTP binding
GO:0016779 nucleotidyltransferase activity
GO:0043814 phospholactate guanylyltransferase activity
GO:0070568 guanylyltransferase activity
Biological Process
GO:0052645 F420-0 metabolic process

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Molecular Function

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Biological Process
External links
PDB RCSB:7p97, PDBe:7p97, PDBj:7p97
PDBsum7p97
PubMed35038903
UniProtE5ASS2|FBID_MYCRK 3-phospho-D-glycerate guanylyltransferase (Gene Name=cofC)

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