Structure of PDB 7nlv Chain AAA Binding Site BS01

Receptor Information
>7nlv Chain AAA (length=117) Species: 1895 (Streptomyces avidinii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPA
TDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTT
EANAWKSTLVGHDTFTK
Ligand information
Ligand IDUJE
InChIInChI=1S/C14H24N4O2S/c19-12(16-9-5-6-15-7-9)4-2-1-3-11-13-10(8-21-11)17-14(20)18-13/h9-11,13,15H,1-8H2,(H,16,19)(H2,17,18,20)/t9-,10-,11-,13-/m0/s1
InChIKeyQSMYOZNFIUDGEL-ZPFDUUQYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)N[CH]3CCNC3
OpenEye OEToolkits 2.0.7C1CNCC1NC(=O)CCCCC2C3C(CS2)NC(=O)N3
OpenEye OEToolkits 2.0.7C1CNC[C@H]1NC(=O)CCCC[C@H]2[C@@H]3[C@H](CS2)NC(=O)N3
CACTVS 3.385O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)N[C@H]3CCNC3
FormulaC14 H24 N4 O2 S
Name5-((3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)-N-((S)-pyrrolidin-3-yl)pentanamide;
5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[(3~{S})-pyrrolidin-3-yl]pentanamide
ChEMBL
DrugBank
ZINC
PDB chain7nlv Chain AAA Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7nlv The role of streptavidin and its variants in catalysis by biotinylated secondary amines.
Resolution1.29 Å
Binding residue
(original residue number in PDB)
N23 L25 S27 Y43 S45 V47 N49 W79 S88 T90 W108 S112 D128
Binding residue
(residue number reindexed from 1)
N8 L10 S12 Y28 S30 V32 N34 W64 S73 T75 W93 S97 D113
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:7nlv, PDBe:7nlv, PDBj:7nlv
PDBsum7nlv
PubMed34825690
UniProtP22629|SAV_STRAV Streptavidin

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