Structure of PDB 6ys1 Chain AAA Binding Site BS01

Receptor Information
>6ys1 Chain AAA (length=571) Species: 554065 (Chlorella variabilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SPVAGQKYDYILVGGGTAACVLANRLSADGSKRVLVLEAGPDNTSRDVKI
PAAITRLFRSPLDWNLFSELQEQLAERQIYMARGRLLGGSSATNATLYHR
GAAGDYDAWGVEGWSSEDVLSWFVQAETNADFGPGAYHGSGGPMRVENPR
YTNKQLHTAFFKAAEEVGLTPNSDFNDWSHDHAGYGTFQVMQDKGTRADM
YRQYLKPVLGRRNLQVLTGAAVTKVNIDKAQALGVEFSTDGPTGERLSAE
LAPGGEVIMCAGAVHTPFLLKHSGVGPSAELKEFGIPVVSNLAGVGQNLQ
DQPACLTAAPVKEKYDGIAISDHIYNEKGQIRKRAIASYLLGGRGGLTST
GCDRGAFVRTAGQALPDLQVKFVPGMALDPDGVSTYVRFAKFQSQGLKWP
SGITMQLIACRPQSTGSVGLKSADPFAPPKLSPGYLTDKDGADLATLRKG
IHWARDVARSSALSEYLDGELFPGSGVVSDDQIDEYIRRSIHSSNAITGT
CKMGNAGDSSSVVDNQLRVHGVEGLRVVDASVVPKIPGGQTGAPVVMIAE
RAAALLTGKATIGASAAAPAT
Ligand information
Ligand IDFAD
InChIInChI=1S/C27H33N9O15P2/c1-10-3-12-13(4-11(10)2)35(24-18(32-12)25(42)34-27(43)33-24)5-14(37)19(39)15(38)6-48-52(44,45)51-53(46,47)49-7-16-20(40)21(41)26(50-16)36-9-31-17-22(28)29-8-30-23(17)36/h3-4,8-9,14-16,19-21,26,37-41H,5-7H2,1-2H3,(H,44,45)(H,46,47)(H2,28,29,30)(H,34,42,43)/t14-,15+,16+,19-,20+,21+,26+/m0/s1
InChIKeyVWWQXMAJTJZDQX-UYBVJOGSSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)c2cc1C
OpenEye OEToolkits 1.5.0Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)O
OpenEye OEToolkits 1.5.0Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O
CACTVS 3.341Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)c2cc1C
ACDLabs 10.04O=C2C3=Nc1cc(c(cc1N(C3=NC(=O)N2)CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c(ncnc45)N)C(O)C6O)C)C
FormulaC27 H33 N9 O15 P2
NameFLAVIN-ADENINE DINUCLEOTIDE
ChEMBLCHEMBL1232653
DrugBankDB03147
ZINCZINC000008215434
PDB chain6ys1 Chain AAA Residue 703 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ys1 Mechanism and dynamics of fatty acid photodecarboxylase.
Resolution1.64 Å
Binding residue
(original residue number in PDB)		G90 T93 A94 L113 E114 A115 F134 W140 R159 G160 G165 S166 N170 A171 L173 M267 V298 A341 G342 H345 N575 A610 Q620 T621 G622
Binding residue
(residue number reindexed from 1)		G14 T17 A18 L37 E38 A39 F58 W64 R83 G84 G89 S90 N94 A95 L97 M191 V222 A261 G262 H265 N495 A530 Q540 T541 G542
Annotation score1
Enzymatic activity
Enzyme Commision number 4.1.1.106: fatty acid photodecarboxylase.
Gene Ontology
Molecular Function
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 flavin adenine dinucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:6ys1, PDBe:6ys1, PDBj:6ys1
PDBsum6ys1
PubMed33833098
UniProtA0A248QE08|FAP_CHLVA Fatty acid photodecarboxylase, chloroplastic (Gene Name=FAP)

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