Structure of PDB 9cai Chain AA Binding Site BS01

Receptor Information
>9cai Chain AA (length=207) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKGPNIINVKKTW
EKLLLAARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSP
GCLTNQIQKTFKEPRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLK
LIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMPD
LYFYRDP
Ligand information
>9cai Chain B2 (length=1476) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaccugauugauucugucagcgcgauaugcucaaguaaaagauuaagcca
ugcaugcgauucauugaaauugcguacggcucauuagagcagauaucacc
uuauccgggauggauaacugcggaaauacuggagcuaauacaugcacccc
agcggggugcaauuauuaguguugacucugaauaaagcaguuuacuguca
gcugacucuauccggaaagggugucugcccuuucaacuagaugguaguuu
auuggacuaccaugguuguuacggguaacggagaauaaggguucgacucc
ggagagggagccuuagaaacggcuaccacguccaaggaaggcagcaggcg
cgaaacuuauccacuguuguaugagauagugacuaaaaauauaguugaau
acaaaugauucuucgaggagagggcaagucuggugccagcagccgcggua
auuccagcucuccuaguguaucucguuauugcugcgguuaaaaagcucgu
aguuggaucuagguuuaccuugaauaaaucagagugcucaauacaagcgc
uugcuugaauagcaucauggaauaaugaaauuaaugguuaagagggacaa
accgggggcauucguaucauuacgcgagaggugaaauucguggaccguag
ugagacgcccaacagcgaaagcauuugccaagaaugucuucauuaaucaa
gaacgaaagucagagguucgaaggcgauuagauaccgcccuaguucugac
cguaaacgaugccaucucgcgauucggagggugcccugccgaggagcauc
cggaaacgaaagucuuucgguuccggggguaguaugguugcaaagcugaa
acuuaaagaaauugacggaagggcaccacaaggcguggagcuugcggcuu
aauuugacucaacacgggaaaacucacccgguccggacaccaugacugac
agauugaaagcucuuucucgauuuggugguugguggugcauggccguucu
uaguugguggagugauuugucugguuuauuccgauaacgagcgagacucu
agccucuaaauaguuggcgaaucuucggguucguuaacuucuuagaggga
uaagcgguguuuagccgcacgagauugagcgauaacaggucugugaugcc
cuuagauguccggggcugcacgcgugcuacacugguggagucagcggguc
cuaugccgaaagguaucgguaaaccguugaaauucuuccauguccgggau
aggguauuguaauuauugcccuuaaacgaggaaugccuaguaagugugag
ucaucagcucacguugauuacgucccugcccuuuguacacaccgcccguc
gcuauccgggacugaacugauucgagaagaguggggacugugcggaaacc
auuuuuaucgcauugguuugaaccggguaaaagucguaacaagguagcug
uaggugaaccugcagcuggaucaucg
...<<<<<.[.((((>>>>><<.<<<<<<<.....<<..<......<<<.
<<<..<<<<<<......>>>>>>......<<.......<<<<<<<<..<<
<..<<<<<..<<.....<<.<<<.....>>>.>>......>>...<<<<<
...>>>>><<..<<<<<...<......>..>>>>>....>>.....<<<<
..>>>>.....>>>>>.>>>>>>>>>>><<<....<<<..<<<<<<<<..
.....>>>>>>>>>>>......>>>...<<<.<<<<....>>>>....>>
>.>>.<<.<<<..........>>>.>>.<.<<....>>.>...>>>>>>.
........<<<....<.....>..>>>..>...>>........<..<<<<
.......>>>>..>..<<<<<((....<.<<<<.....<<..))>>....
...>>>>>>>>>>..>>>>>>>.>>.........<<<((.....<.<<..
.<<<.<<.......<<<<<.<<<.......<..<<.......>>.<<<..
..>>>....>....>>>.>>..>>>............>>....<<<<<<.
..<...<<<<..<<..<<<<<<<<...<<<......>>>......>>>>>
>>>..>>.......<<....>>...>>>>..>..>>>.>>>...>>>...
>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>>>>
..........<<<..<..<<..<<<<<<<<<..>>>>.>>>>>..>>...
<<..))>>...>......>>>.>>>.<<<......<<<<....>>>>...
.>>>..)))).]<<<<<.<<<<<<<..<<.<<<<<<..<<<.<<<<<<..
....<<........>>..........<<<<<.<....<<<<<.....<<.
<<<........>>>.>>......>>>>>...<<.<<<..<<.<<<<<<..
..<<<.<<<<......>>...<<<......>>>...>>.>>>....<<<.
..<<<<<<<..<<<<<<<<<<<<....>>>>>>>>>>>>..>>>>>>>..
...<<<<<.....>>>>>........>>>....>>>.>>>.....>>>>>
>>.....>.>>>>>...>>.>>>>.>>>.....<<.<<<<......<<.<
<.<<<<<....>>>>>.>>....>>.......>>>>.>>......<....
<<<<<<..........>>>>>>....>.....>>>>>>....<<<<<<<<
.......>>>>>>>>......>>...>>>>>>>>>>.>>....<..<<.<
..<<<<<<<....<<<<<<<<.<<<.<<<<<<<<...<<<..>>>...>>
>>>>>>.>>>.>>>>>>>>...>>>>>>>...>.>>...>.....<<<<<
<<<<<..>>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.
Resolution2.59 Å
Binding residue
(original residue number in PDB)
F32 Q35 R102 P105 T109 N110 Q111 Q113 E136 Y139
Binding residue
(residue number reindexed from 1)
F31 Q34 R97 P100 T104 N105 Q106 Q108 E131 Y134
External links
PDB RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum9cai
PubMed39209556
UniProtP46769|RSSA_CAEEL Small ribosomal subunit protein uS2 (Gene Name=rps-0)

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