Structure of PDB 4v5o Chain A8 Binding Site BS01

Receptor Information
>4v5o Chain A8 (length=93) Species: 5911 (Tetrahymena thermophila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKGGKKKWTKGKAKDKVNHAVFIEKKNVESIINNPSKVGKVLTVSTVVEK
LKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSVIGGVKEDK
Ligand information
>4v5o Chain AA (length=1745) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaccugguugauccugccaguuacauaugcuugucuuaaauauuaaccca
ugcaugugccaguucaguauugaacagcgaaacugcgaauggcucauuaa
aacaguuauaguuuauuugauaauuaaagauuacauggauaaccgagcua
auuguugggcuaauacaugcuuaaaauuccguguccugcgaccggaacgu
auuuauuagauauuagaccaaucgcagcaaugugauugagaugaaucaaa
guaacugaucggaucgagguuuaccucgauaaaucaucuaaguuucugcc
cuaucagcucucgaugguaguguauuggacuaccauggcagucacgggua
acggagaauuaggguucgauuccggagaaggagccugagaaacggcuacu
acaacuacgguucggcagcagggaagaaaauuggccaauccuaauucagg
gagccagugacaagaaauagcaagcugggaaacuuacguuucuacggcau
ugaaaugagaacaguguaaaucucuuagcgaggaacaauuggagggcaag
ucauggugccagcagccgcgguaauuccagcuccaauagcguauauuaaa
guuguugcaguuaaaaagcucguaguugaacuucuguucagguucauuuc
gauucgucgugugaaacuggacauacguuugcaaacuaaaaucggcguuc
gacuuagggaguaaacauuuuacugugaaaaaauuagaguguuccaggca
gguuuuagcccgaauacauuagcauggaauaauggaauaggacuaagucc
auuuuauugguucuuggauuugguaaugauuaauagggacaguugggggc
auuaguauuuaauagucagaggugaaauucuuggauuuauuaaggacuaa
cuaaugcgaaagcauuugccaaagauguuuucauuaaucaagaacgaaag
uuaggggaucaaagacgaucagauaccgucguagucuuaacuauaaacua
uaccgacucgggaucggcuggaauaaauguccagucggcaccguaugaga
aaucaaagucuuuggguucugggggaaguaugguacgcaagucugaaacu
uaaaggaauugacggaacagcacaccagaaguggaaccugcggcuuaauu
ugacucaacacggggaaacucacgagcgcaagacagagaagggauugaca
gauugagagcucuuucuugauucuuugggugguggugcauggccguucuu
aguugguggagugauuugucugguuaauuccguuaacgaacgagaccuua
accugcuaacuagucugcuuguaaauaacagguuguacuucuuagaggga
cuauugugcaauaagccaauggaaguuuaaggcaauaacaggucugugau
gccccuagacgugcucggccgcacgcgcguuacaaugacuggcgcaaaaa
guauuuccuguccugggaagguacggguaaucuuauuaauaccagucgug
uuagggauaguucuuuggaauuguggaucuugaacgaggaauuucuagua
agugcaagucaucagcuugcguugauuaugucccugccguuuguacacac
cgcccgucgcuuguaguaacgaauggucuggugaaccuucuggacugcga
cagcaauguugcggaaaaauaaguaaacccuaccauuuggaacaacaaga
agucguaacaagguaucuguaggugaaccugcagauggaucauua
...<<<<<.{.[[[[>>>>><.<.<<<<<<...<<<<.........<<<.
<<<..<<....<<<..<<........>>..>>>.>>......<<......
..<<<..<<..<<....<<<<..............<<.....<<.<<<..
...>>>.>>......>>.........<<<<<.<<<....>>>>>>>>.<<
<.<<<<<........(((((((<<<......>>>.....<......>..>
>>>>.>>..>...<<<<<<....>>>>>>...>>>>...>>>>..>>>.<
<<....<<<....<<<<<<<<.......>>>>>>>>>>>......>>>..
.<<<.<<<<....>>>>....>>>.>>.<<.<<<..........>>>.>>
..<<<....>>>.....>>>>>>.........<<<....<<<.....>>>
..>>>......>>>>.....<<<<<<.<<<<<<....>>>>>>..>>>.>
>>......<...<<.........>>...>.........<<<<<((.....
...<<<.....<<..))>>.......>>>..>>>>>..>>>>>>.>.>..
.......<<<[[.....<.<<...<<<.<<....<<<<<<<.<<<<<..<
<<....>>>.>>>>>.>>>>>>>....<<<<....<<<<..<<<<...>>
>>.>>>>....>>>>...<<..<..........<................
<.......>......>.........>....>>.........<<<<<<<<<
<....)))))))..>>>>>>>>>>.....>>....<<<<<<.<<...<<<
<..<<..<<<<<<<<...<<<......>>>......>>>>>>>>..>>..
.....<<....>>...>>>>...>>>>>.>>>...>>>...>>.>...<<
<<<<<<...<...<<<<.........>>>>...>>>>>>>>>........
.<<<.<<.<<<..<<<<<<<<<.......>>>>>>>>>..>>>...<<..
]]>>...>>.....>>>.>>>.<<<......<<.<<....>>>>....>>
>..]]]].}<<<<<.<<<.<<<.<<.<<<<<<..<<<.<<<<<<......
<<........>>..........<<<<<<<....<<<<<<.......<<.<
<<........>>>.>>.....>>>>>>...<<.<<<..<<<<<<<<<...
.<<<.<<<<<....>>>...<<<......>>>...>>.>>>....<<<<<
.<<..<<<<..<<<<.<<<<<<.....>>>>>>.>.>>>..>>>>.>>..
..<<<<..........>>>>.......>>>>>....>>>.>>>...>.>>
>>>>>.....>>>>>>>...>>.>>>>.>>>.....<<<<<<.......<
<.....<<<<<<<<....>>>.>>>>>....>>........>>>>>>...
...<....<<.<<<..........>>>.>>....>.....>>>>>>....
<<<<<<<<.......>>>>>>>>......>>...>>>.>>>>>>.>>...
....<<.<.<<<<<.....<<<<<<<<..<<<..<<.<..<...<<<<<<
<<....>>>>>>>>...>..>.>>..>>>..>>>>>>>>.....>>>>>.
.>.>>.........<<<<<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v5o Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1.
Resolution3.93 Å
Binding residue
(original residue number in PDB)
K27 K28 K29 K38 V66 S78 R81 R85 K98 N101
Binding residue
(residue number reindexed from 1)
K5 K6 K7 K16 V44 S56 R59 R63 K76 N79
External links