Structure of PDB 6hiv Chain A5 Binding Site BS01

Receptor Information
>6hiv Chain A5 (length=55) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PKRKKNPMQLRRKVYGLHFKEKYLKMEEWYYCPLCAEPKKPGEWCRREDC
RQIKP
Ligand information
>6hiv Chain AA (length=591) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
auuuuaccaauuaagaagaauauuauaauaaugggugucuuauauuuuaa
auaaauauuuaaauuccguguaguaaauuuauuauuuguauuauuuauau
aauagguguauuauauuuaaauuuuaaauuuguuguuuuauauuuagaua
cauauuuauagauuaauauauuuaaauaauauuuuaaaauuuauugaaaa
auaaauauaguaagauuauuuuaguaaauauuuauuuuucuuuguaaaua
uuauuaacuaaaauguuauauauaauaaucuaaguuaauuugaauauuaa
aaguacaaguauaauuuguaauucuaaaguauauuuauauuuuuaguagg
uaaaugaaaaguauaaauggauauaacuuaauauuuaauauuuguuuaau
gaaaaguauuuuauuauuauauuguauaguauuauuauaguguauaguuu
uuuaaaaauauaaaaaauaaaguaugaauuaauaucaaaauuuuaauaaa
aauuaaaaaauuaaaauaagaaacauuaugauauguacuauauucuuugu
auuuaauuuuuauaauuaauaagaaagaagaauauaauuua
....<<<................<<.........................
............<.....>......................>>.......
.......>>>..............<<<<........>>>><<<<......
...........<<....>>.............<<<....<<<<<<....>
>>>>>.......>>>...........<<<<<<<<..........>>>>>>
>>....<<<<............<...............<<<.......>>
>...........<<<.....>>>.......>............>>>>...
.............................>>>><.......<........
..................................................
..........<....>.......>......>.......<<<<<......>
>>>>....<<<<<<.<<<....<<<<......>>>>..<<.......>>>
>>>>>>>>.................................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6hiv Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Resolution7.8 Å
Binding residue
(original residue number in PDB)
P26 K27 R28 K29 K30 N31 Q34 L35 R36 R37 K38 Y40 H43 E46 K47 Y48 K50
Binding residue
(residue number reindexed from 1)
P1 K2 R3 K4 K5 N6 Q9 L10 R11 R12 K13 Y15 H18 E21 K22 Y23 K25
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6hiv, PDBe:6hiv, PDBj:6hiv
PDBsum6hiv
PubMed30213880
UniProtQ584F4

[Back to BioLiP]