Structure of PDB 9xia Chain A Binding Site BS01
Receptor Information
>9xia Chain A (length=387) Species:
1929
(Streptomyces rubiginosus) [
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MNYQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVESVQRLAELGAHG
VTFHDDDLIPFGSSDSEREEHVKRFRQALDDTGMKVPMATTNLFTHPVFK
DGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKD
VRDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHAL
AFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQN
GIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDFKPPRTEDFDGVW
ASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAADGLQAL
LDDRSAFEEFDVDAAAARGMAFERLDQLAMDHLLGAR
Ligand information
Ligand ID
DFR
InChI
InChI=1S/C7H14O5/c1-4-6(10)5(2-8)12-7(4,11)3-9/h4-6,8-11H,2-3H2,1H3/t4-,5+,6-,7+/m0/s1
InChIKey
DUZROZVFCQUFGS-BNHYGAARSA-N
SMILES
Software
SMILES
CACTVS 3.341
C[CH]1[CH](O)[CH](CO)O[C]1(O)CO
OpenEye OEToolkits 1.5.0
CC1C(C(OC1(CO)O)CO)O
OpenEye OEToolkits 1.5.0
C[C@H]1[C@@H]([C@H](O[C@@]1(CO)O)CO)O
ACDLabs 10.04
OCC1(O)OC(C(O)C1C)CO
CACTVS 3.341
C[C@H]1[C@H](O)[C@@H](CO)O[C@]1(O)CO
Formula
C7 H14 O5
Name
3-deoxy-3-methyl-beta-D-fructofuranose;
3-DEOXY-3-METHYL-D-FRUCTOSE;
3-deoxy-3-methyl-beta-D-fructose;
3-deoxy-3-methyl-fructose
ChEMBL
DrugBank
ZINC
ZINC000024990681
PDB chain
9xia Chain A Residue 389 [
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Receptor-Ligand Complex Structure
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PDB
9xia
X-ray analysis of D-xylose isomerase at 1.9 A: native enzyme in complex with substrate and with a mechanism-designed inactivator.
Resolution
1.9 Å
Binding residue
(original residue number in PDB)
W16 H54 M88 T90 V135 W137 E181 D245 D287
Binding residue
(residue number reindexed from 1)
W16 H54 M88 T90 V135 W137 E181 D245 D287
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
H54 D57 M88 E181 K183 E217 H220 D245 D255 D257 D287
Catalytic site (residue number reindexed from 1)
H54 D57 M88 E181 K183 E217 H220 D245 D255 D257 D287
Enzyme Commision number
5.3.1.5
: xylose isomerase.
Gene Ontology
Molecular Function
GO:0000287
magnesium ion binding
GO:0009045
xylose isomerase activity
GO:0016853
isomerase activity
GO:0042802
identical protein binding
GO:0046872
metal ion binding
Biological Process
GO:0005975
carbohydrate metabolic process
GO:0042732
D-xylose metabolic process
Cellular Component
GO:0005737
cytoplasm
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:9xia
,
PDBe:9xia
,
PDBj:9xia
PDBsum
9xia
PubMed
2734296
UniProt
P24300
|XYLA_STRRU Xylose isomerase (Gene Name=xylA)
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